Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A18
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a prote...    29   4.4  
Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   7.7  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   7.7  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 121 YDPAGLRDRPIPVGKTT*HSPDTPSRSIHSQSFSKRHKQ**CHLKKKTRN*IRKSTGGR 297
           +DP+GLR  PIP GK    +  TP R   S    +  ++    +    R   R+++GGR
Sbjct: 523 FDPSGLRSPPIPAGKP---NNGTPKRMTFSPIADESEEENGARIPSPPRE--RRASGGR 576


>AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a protein
           protein 195 protein.
          Length = 458

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 432 YFVKYVFSYTCSFEAYLHPFYNNSTNFQFLINTKIYLEN*YFKFYTALENNHAFFHFLNI 611
           Y  K+   +  SF  + +   N+ T   FL N + +     F+F+   EN+  F  +L I
Sbjct: 7   YVAKFQNVFPESFRTFQNFLGNSKTVHMFLENFRTFPVGQIFQFFKVRENHMKF--YLLI 64

Query: 612 SHFQRCAL 635
           S  Q C +
Sbjct: 65  SERQTCRI 72


>Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical
           protein F11A3.1 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 324 YHHPAYFCREAVMRFGLKGGAAVVTEYEISKRAHVAYFVKYVFSY 458
           +H+ ++F   A+    + G +A+ T+YE+ +R  V    K VF+Y
Sbjct: 82  WHYTSFFIGCAINGGAVSGASALFTDYEL-QRQFVDSRAKVVFTY 125


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 179  HQTHRVAVFIRNHSRSVINNDNAI*KKKREIKSVKVLVVGRLVS 310
            HQT  V   I++   SVI+ND+ + K+  + K+V   +   ++S
Sbjct: 2813 HQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIIS 2856


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 179  HQTHRVAVFIRNHSRSVINNDNAI*KKKREIKSVKVLVVGRLVS 310
            HQT  V   I++   SVI+ND+ + K+  + K+V   +   ++S
Sbjct: 2813 HQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIIS 2856


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,814
Number of Sequences: 27780
Number of extensions: 325037
Number of successful extensions: 657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)