Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A18
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 309 LTRRPTTSTFTDLISRFFF*MALSLF 232
           L++ PT S   D+ISR FF +  + F
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFF 430


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 309 LTRRPTTSTFTDLISRFFF*MALSLF 232
           L++ PT S   D+ISR FF +  + F
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIVFAFF 430


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 566 HCFRK*SCFFSFPEHF 613
           +C R  SC++S   HF
Sbjct: 10  YCRRNFSCYYSLKRHF 25


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +2

Query: 113 AYIMIPRDYGIVPSRWVKRHNIHQTHRVAVFIRNHSRSVINNDN 244
           AYI     Y +V   W K  +   TH    F   +    IN  N
Sbjct: 189 AYISDLSGYALVVYSWAKNDSWRITHNFFYFDPRYGNYNINGFN 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,903
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)