Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A17
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    28   1.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.1  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.7  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.9  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   8.9  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 472 LAYIFQNEISQSSKLSEELKW 410
           L+Y++Q + S+ SK++E+L W
Sbjct: 295 LSYLYQMDFSEPSKVNEQLDW 315


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 533 FCELFYFYTNSYVQFIIITVHKQNIHNICSYK 628
           FC  FYF   S+  F+  ++H      +C +K
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHK 139


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 503  NSIPIFRRFHFCELFYFYTNSYVQFII-----ITVHKQNIHNICSYKTNCTIYFADGTR 664
            NS P +R+          ++ +V F I     I V +Q + ++C  K  CT++F   TR
Sbjct: 1930 NSSPFYRKHIISVHQVTRSDLHVLFAIAHQMRIIVERQGVIDLCYGKLLCTMFFEPSTR 1988


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 197 MLFLSFLPLTAFRRPYP 147
           ML +S  P+ +FRRPYP
Sbjct: 704 MLKVSITPIGSFRRPYP 720


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 468 LIFFKMKYHSLVSFLKS*NGIINSFKNRLFEF 373
           +++ ++ YH + SFL+S N + +S K +L  F
Sbjct: 349 ILWKEVDYHCISSFLQSSNELASSLKKQLPSF 380


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 163 KAVRGKKDKNNIQILSLAPFTCGSY 237
           K  + KK+KN  +ILS+ P+   SY
Sbjct: 19  KQTKRKKNKNKKRILSILPYYKNSY 43


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 542 LFYFYTNSYVQFIIITVHKQNIHNICSYKTNCTIYFADGTRX*RHSXHFFXDINV 706
           +++ +T+S +  I I++ K+ + +ICS   NC I   +  R      H F  +NV
Sbjct: 526 MYHAFTSSII--IFISILKRPLASICSEDLNCLISVKN--RLISFETHGFVRLNV 576


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 508 RIMWKTDWLPNKLAYIF 458
           RI+W   W P ++ Y F
Sbjct: 625 RIIWDASWAPKEMGYFF 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,019
Number of Sequences: 5004
Number of extensions: 54724
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)