Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A17
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical...    29   3.6  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine re...    29   4.7  
AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 491 SLPHNSIPIFRRFHFCELFYFYTNSYVQF 577
           SL  N +P FR F FC++F+F   ++  F
Sbjct: 243 SLIQNQVPNFRFFLFCKIFFFSKAAHSTF 271


>AC006730-11|ABO16462.1|  327|Caenorhabditis elegans Hypothetical
           protein Y27F2A.11 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 600 KIFTIFAVTKPIVQYILQTVPVINVIRXISXMILTSALXEESSH 731
           KIF I+A+T   + +I+ ++ ++N+IR +S + L  +      H
Sbjct: 209 KIFIIYAITGGSIGFIVFSLVLLNIIRMLSQLRLKISKSNYQKH 252


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 368 FKLTCMNEICLL*NHNSSLKYFFPLILYQVINNLF 264
           FKLT + EI  +  +  S+    P+I+  +++N+F
Sbjct: 225 FKLTSLTEIYQISENVKSISLLIPIIVVMIVSNIF 259


>AF125958-1|AAD14729.1|  342|Caenorhabditis elegans Serpentine
           receptor, class j protein9 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 270 FIFLLI*KYFNITSTCKRSQ-GKYLYVIFILFAPYSL*TSLSEIL 139
           F F++   +  +  T  RSQ GKY Y++ I+FA + +  S+SEIL
Sbjct: 18  FSFIINPIFIYLAMTKSRSQMGKYKYLL-IIFAIFDILYSISEIL 61


>AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical
           protein F08F1.4b protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 356 CMNEICLL*NHNSSLKYFFPLILYQVINNLFFF*FKSTLI 237
           CM+ I +  N N ++    P ILY  +  LFF  FK+++I
Sbjct: 103 CMDIITIRNNENDTIT---PKILYGFLQKLFFLKFKTSVI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,386
Number of Sequences: 27780
Number of extensions: 291724
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)