Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A14
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     28   0.43 
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    28   0.57 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   3.0  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   3.0  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   4.0  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.0  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   4.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   5.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    24   7.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   7.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   7.0  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    24   9.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    24   9.3  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 215 HKLHFMQNIFYTLQYLPRYEILLL 144
           H  HF Q +   L+YL RY+ LLL
Sbjct: 425 HCFHFSQTVLSGLRYLQRYDWLLL 448


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 209 LHFMQNIFYTLQYLPRYEILLLCI 138
           LHF+++ FY +QY+  Y  +LL +
Sbjct: 204 LHFLRSCFYLVQYIVAYIAMLLAM 227


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 236 INSFFFFHKLHFMQNIFYTLQYLPRY 159
           I S F    LH+++++F  + +LPRY
Sbjct: 104 IFSHFGTRLLHYLRSLFPIMNWLPRY 129


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 219 EKKTIDSGNSIKC*FLRLKHL---KHKIQ-AHSLSNKINNMIIIHK 344
           + K ++SG ++   ++++K L   K+ I   H L N +N M +IHK
Sbjct: 433 DAKELESGITMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHK 478


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 65  YQQHALSAIHTLLLNLIFSELQLQQ 139
           Y  H LSA++T   N ++SE QL +
Sbjct: 528 YLTHRLSALYTSSENWVYSEQQLAE 552


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -3

Query: 343 LCIIIMLLILFDRECA*ILCFKCFSLRN*HFMELPLSIVFFSFIS-YILCRIFFTRCNIY 167
           +C++IM LIL+ +E   IL F  F + +   M      V FSF + Y L ++  T   + 
Sbjct: 24  VCLLIMFLILYSQE---ILSF--FFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKT---LI 75

Query: 166 RDMKYYYYALLQL*FTKYQI 107
           R + Y ++  L L   +Y++
Sbjct: 76  RKLLYCFHYALDLFADEYKV 95


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 236 INSFFFFHKLHFMQNIFYTLQYLPRY 159
           + S  F + LH+++++F  +++LP Y
Sbjct: 91  VTSNIFKNFLHYLKSLFPIIEWLPNY 116


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 245 VTTINSFFFFHKLHFMQNIFYTLQYLP 165
           V +++S    H L F+QN + T  Y+P
Sbjct: 640 VGSLDSVNLHHLLGFIQNTYSTTSYIP 666


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 379 YIVTRESXQNAVLCIIIMLLILFD 308
           +++ +ES  + + CI+   L+LFD
Sbjct: 163 FLIMKESGYDLLACIVSSSLVLFD 186


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 222 KKTIDSGNSIKC*FLRLKHLKHKIQAHSLSNKIN 323
           KK  DS   ++C   R+K+L H+   H L   +N
Sbjct: 389 KKDEDSAAGLRCLVFRIKYLAHR--PHRLKIDLN 420


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +2

Query: 47   LTIQSTYQQHALSAIHT------LLLNLIFSELQLQQCIVVI 154
            L++Q+T+Q +AL ++HT      L  N   S  QL+ C +++
Sbjct: 1355 LSVQTTHQINALESVHTSFQHFKLFTNTKQSLNQLKDCTLLL 1396


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 44  FLTIQSTYQQHALSAIHTL 100
           F +I++T+ QH +  IHTL
Sbjct: 214 FYSIRATHPQHFIRFIHTL 232


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 236 INSFFFFHKLHFMQNIFYTLQYLPRYEI 153
           +NS F  H L      F+ L  LP Y+I
Sbjct: 458 LNSIFGLHSLMATPKPFFALPGLPGYDI 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,205
Number of Sequences: 5004
Number of extensions: 26428
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)