Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A12
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.6  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   2.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   5.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.8  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   8.8  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   8.8  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 107 MLCSSIFHYK*ALTLCINARXDDVCIVICKLYTL 6
           +L  ++ H K  L LCINAR   V +   K+ T+
Sbjct: 708 LLTLAVTHVKVLLELCINARPSTVLVPAMKMATI 741


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 254 VYSFNIYL*FSFDIILKNTPSYKILYENVFFYSLIQN 364
           V S NIY+   + I+     ++ IL+ +V+ +++I+N
Sbjct: 320 VLSLNIYIGLIYSILYLWFEAFPILFTSVYHFTIIEN 356


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 305  NTPSYKILYENVFFYSLIQNRVF 373
            N PS+  LY N  F++ IQ +VF
Sbjct: 1351 NNPSFISLYPNFKFFNKIQTQVF 1373


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 567  EIQS-CRGLMSVGFSSSFVLAEHSANSTLFLM*ENSKSLPSLP 692
            EI+S CR LM+VG +       H+A     L  E    +P+LP
Sbjct: 1186 EIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLP 1228


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 622 WPNTLRIRLYF*CERIRNLYPLYLGTTRCCLQTDRRTAVDS 744
           WP TL  +L+F  E  R+   LY+ +TR  +  DR + +++
Sbjct: 170 WPQTLNFKLWFFNEVYRHF--LYINSTR--IYEDRPSHIEA 206


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 588 LMSVGFSSSFVLAE---HSANSTLFLM*ENSKSLPSLPRNDPVLPSDGS 725
           L SVG SS F   E   HS    L      SKSL  L + +P+ P D S
Sbjct: 163 LSSVGNSSDFREVEPGFHSVQVDLIPKINFSKSLMQLEKTNPLPPVDES 211


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 584 SAGLDFEAVD*NYHYYFFALPTILSICFSHSTLLCRF 474
           S GL   A++      F   PT LS CF+H  L+  F
Sbjct: 152 SLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAF 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,332
Number of Sequences: 5004
Number of extensions: 56301
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)