Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A12
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065299-1|AAH65299.1|  271|Homo sapiens signal recognition part...    51   5e-06
BC063001-1|AAH63001.1|  271|Homo sapiens signal recognition part...    51   5e-06
AK075531-1|BAC11675.1|  271|Homo sapiens protein ( Homo sapiens ...    51   5e-06
AF141882-1|AAD34888.3|  271|Homo sapiens APMCF1 protein.               51   5e-06
AF086914-1|AAP97144.1|  271|Homo sapiens signal recognition part...    51   5e-06
AK027525-1|BAB55176.1|  271|Homo sapiens protein ( Homo sapiens ...    50   1e-05

>BC065299-1|AAH65299.1|  271|Homo sapiens signal recognition
           particle receptor, B subunit protein.
          Length = 271

 Score = 50.8 bits (116), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 754 VTXSNQLQSVDPSEGNTGSFLGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQ 578
           VT S    ++D S     + LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+
Sbjct: 206 VTRSAAPSTLD-SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLE 264

Query: 577 DWISKL 560
            W++K+
Sbjct: 265 KWLAKI 270


>BC063001-1|AAH63001.1|  271|Homo sapiens signal recognition
           particle receptor, B subunit protein.
          Length = 271

 Score = 50.8 bits (116), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 754 VTXSNQLQSVDPSEGNTGSFLGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQ 578
           VT S    ++D S     + LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+
Sbjct: 206 VTRSAAPSTLD-SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLE 264

Query: 577 DWISKL 560
            W++K+
Sbjct: 265 KWLAKI 270


>AK075531-1|BAC11675.1|  271|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0230 fis, clone HEMBA1006391, highly similar to
           SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT. ).
          Length = 271

 Score = 50.8 bits (116), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 754 VTXSNQLQSVDPSEGNTGSFLGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQ 578
           VT S    ++D S     + LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+
Sbjct: 206 VTRSAAPSTLD-SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLE 264

Query: 577 DWISKL 560
            W++K+
Sbjct: 265 KWLAKI 270


>AF141882-1|AAD34888.3|  271|Homo sapiens APMCF1 protein.
          Length = 271

 Score = 50.8 bits (116), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 754 VTXSNQLQSVDPSEGNTGSFLGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQ 578
           VT S    ++D S     + LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+
Sbjct: 206 VTRSAAPSTLD-SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLE 264

Query: 577 DWISKL 560
            W++K+
Sbjct: 265 KWLAKI 270


>AF086914-1|AAP97144.1|  271|Homo sapiens signal recognition
           particle receptor beta subunit protein.
          Length = 271

 Score = 50.8 bits (116), Expect = 5e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -1

Query: 754 VTXSNQLQSVDPSEGNTGSFLGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQ 578
           VT S    ++D S     + LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+
Sbjct: 206 VTRSAAPSTLD-SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLE 264

Query: 577 DWISKL 560
            W++K+
Sbjct: 265 KWLAKI 270


>AK027525-1|BAB55176.1|  271|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14619 fis, clone NT2RP1001569, highly similar to
           SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT. ).
          Length = 271

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = -1

Query: 694 LGKEGKDFEFSHIRNKVEFAECSA-NTNDDENPTDIKPLQDWISKL 560
           LGK+GK+FEFS +  KVEF ECSA     D    DI+ L+ W++K+
Sbjct: 225 LGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSADIQDLEKWLAKI 270


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,030,680
Number of Sequences: 237096
Number of extensions: 1626942
Number of successful extensions: 2438
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2438
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)