Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A11
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-3|CAA21707.1|  362|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z81125-2|CAD56600.1|  507|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81125-1|CAB03382.1|  501|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL032652-3|CAA21707.1|  362|Caenorhabditis elegans Hypothetical
           protein Y63D3A.4 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 104 DILYT*NVIDIKCFPIKQSKSITAVTHSEHGI-YYNKV*TNKMLQI-KINV*VFN*DTIY 277
           DIL+   V+D    PI + +S+  + +S  G  YY  +  +KM  + K +V  F    +Y
Sbjct: 152 DILFLQEVVDRDLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSGMY 211

Query: 278 KELKI 292
           + L+I
Sbjct: 212 RTLQI 216


>Z81125-2|CAD56600.1|  507|Caenorhabditis elegans Hypothetical
           protein T22A3.4b protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 551 PLIFLSLELHKLCLFFKHVYYLRSVLLRI*VHNRVLKHRENNINLKN 691
           P  F ++ + ++C    H YYL+++ L   +  ++ K  E  + L N
Sbjct: 429 PYAFDAMNIFEVCFGLDHPYYLQTLALWTYLEKKIPKSTEELVQLTN 475


>Z81125-1|CAB03382.1|  501|Caenorhabditis elegans Hypothetical
           protein T22A3.4a protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 551 PLIFLSLELHKLCLFFKHVYYLRSVLLRI*VHNRVLKHRENNINLKN 691
           P  F ++ + ++C    H YYL+++ L   +  ++ K  E  + L N
Sbjct: 423 PYAFDAMNIFEVCFGLDHPYYLQTLALWTYLEKKIPKSTEELVQLTN 469


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 307 FVCVTYF*FFINSVSIKYLDIYFYL*HFICLYFVIINAML 188
           F+C+TY    + S S  YL     + H ICL F I NA L
Sbjct: 30  FLCLTYKKPALRSKS-SYLQCVLSVSHIICLLFEIPNAAL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,155
Number of Sequences: 27780
Number of extensions: 321100
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)