Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A08
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   144   2e-35
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   5.2  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   6.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   9.1  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    25   9.1  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  144 bits (348), Expect = 2e-35
 Identities = 64/130 (49%), Positives = 88/130 (67%)
 Frame = -2

Query: 770 DPREREANSLNXVYIEMDGSIGCMVNGAGLAMATMDIITLNGGKPANFLDLGGGVGQSQV 591
           DP E  A  +   +I++DG+IGC+VNGAGLAMATMDII L+GG+PANFLD+GG      +
Sbjct: 268 DPDEARAAKVGLNFIKLDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAI 327

Query: 590 SAALKILESDPKVKTIFVNVFGGIVNCATIANGIVSACRENPPKHPLVIRLEGTNSGEAR 411
             A  ++ +DPK   IFVN+FGGIV C  IA G++S         P++ RL+GTN G A+
Sbjct: 328 REAFSLITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQGTNQGAAK 387

Query: 410 KILEQSGLPV 381
           +++  SGL +
Sbjct: 388 EVINNSGLRI 397


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
 Frame = -2

Query: 746 SLNXVYIEMDGSIGCMVNGAGLAMATMDIITLNGG--KPANFLDLGGGVGQSQVSAALK- 576
           SL    +  +G +  +V G G ++   D + +NG   + AN+ +  G     Q     K 
Sbjct: 323 SLKLTILNAEGRVWNLVAGGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKT 382

Query: 575 ----ILESDPKVKTIFVNVFGGIVNCATIA---NGIVSACRENPPK---HPLVI--RLEG 432
               +   +P+     + + GGI N  + A     I  A  +   K   H + I  R  G
Sbjct: 383 VLDLMTRGEPRADGKVLFIGGGIANFTSPAVTFRAIARALGDYKDKLHAHKVSIWVRRAG 442

Query: 431 TNSGEARKILEQSG----LPVKI 375
            N  E  +++ ++G    LP+K+
Sbjct: 443 PNYQEGLRVIREAGKKFDLPLKV 465


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 604 PTPPPRSRKLAGLPPFSVMISIVAMASPAP 693
           P PPP SR+  G PP     S  ++  P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 580 KAAETCDCPTPPPRSRKLAGLPPFSVMISIVAMA 681
           KA  + D PT PPR       P  SV I+I AMA
Sbjct: 284 KATLSFDAPTVPPRKYLETLQPNQSVCIAIGAMA 317


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +1

Query: 526 PKTLTKIVFTLGSDSKIFKAAETCDCPTPPPRSRKLAGLPPF---SVMISIVAMASPAPL 696
           P+T       L S S++    E    P+ PP   ++ G P F   +  IS  + A P  L
Sbjct: 204 PETSGPASSVLPSSSQLESFNEFMFLPSSPPGLDEINGAPSFEELNFQISQPSPAHPVDL 263

Query: 697 TMXPILPSISMYTXLREFASL 759
           +     P+IS  +   +   L
Sbjct: 264 SSPETAPNISPVSPFAQLVKL 284


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 629  FLDLGGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNC-ATIANGIV 486
            +L   GG+  ++ + AL   E DP V+ + +++  G V    T AN ++
Sbjct: 910  YLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVI 958


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 633 GRFATIQRDDIHSGHGKSCTI 695
           G++  +  DD H GH KS TI
Sbjct: 137 GQWNIVYHDDSHFGHDKSLTI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,104
Number of Sequences: 5004
Number of extensions: 64328
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)