Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_A08
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624... 86 3e-17
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 31 1.3
03_06_0673 - 35446537-35446629,35447001-35448548 30 2.4
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 29 3.1
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 29 4.1
05_01_0131 + 888247-888771,889092-889154 29 5.4
03_02_0922 - 12417328-12417816,12417929-12418399,12418568-124186... 29 5.4
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 28 9.5
05_05_0133 + 22614219-22614651,22614767-22615671,22615918-226162... 28 9.5
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 28 9.5
04_01_0503 + 6594896-6595804 28 9.5
01_02_0025 + 10310497-10310714,10311714-10311940,10312342-103124... 28 9.5
>02_04_0655 +
24761323-24761424,24761565-24761675,24762361-24762472,
24763049-24763113,24763727-24763804,24764550-24764624,
24764747-24764899,24764988-24765122,24765325-24765495
Length = 333
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/60 (66%), Positives = 45/60 (75%)
Frame = -2
Query: 770 DPREREANSLNXVYIEMDGSIGCMVNGAGLAMATMDIITLNGGKPANFLDLGGGVGQSQV 591
DPRE A + YI +DG IGCMVNGAGLAMATMDII L+GG PANFLD+GG + QV
Sbjct: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGSASEGQV 333
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 523 PPKTLTKIVFTLGSDSKIFKAAETCDCPTPPPRSRKLAGLPPFSVMISIVAMASPAP-LT 699
PP F S IF+AA + P PPP S A PP + ++ P +
Sbjct: 43 PPPGAHVHYFRAASPIPIFRAAASSRPPRPPPPSTTTAPPPPAAPAVTPARPPPQQPAVA 102
Query: 700 MXPILPSISMYTXLREFASLSRGS 771
+ P+ +M T E A+ + G+
Sbjct: 103 VAAPPPATTMATATEEVAAPATGN 126
>03_06_0673 - 35446537-35446629,35447001-35448548
Length = 546
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 623 DLGGGVGQSQVSAALKILESD-PKVKTIFVN--VFGGIVNCATIANGIVSAC 477
D+ GG+ SQV +K LE D KV + V + GI C+ I GIV+ C
Sbjct: 171 DIAGGITPSQVDKVVKELEEDRKKVGAVLVTSPTYHGI--CSNI-QGIVNVC 219
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = -2
Query: 662 IITLNGGKPA-NFLDLGGGVGQSQVSAALKILESDPKVKTIFVNVFGGIVNCAT--IANG 492
I+ +G +P + G + QS + ALK L + P+V+ GIV + G
Sbjct: 400 IVGHSGVRPLIDICQTGDSISQSAAAGALKNLSAVPEVRQALAE--EGIVRVMVNLLDCG 457
Query: 491 IVSACRENPPKHPLVIRLEGTNSGEARKILEQSGL 387
+V C+E + + L +N G R ++ + GL
Sbjct: 458 VVLGCKEYAAE--CLQSLTSSNDGLRRAVVSEGGL 490
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +1
Query: 655 VMISIVA--MASPAPLTMXPILPSIS 726
V IS VA +ASPAP T P+LPS++
Sbjct: 407 VSISCVASILASPAPWTTAPVLPSLA 432
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 592 TCDCPTPPPRSRKLAGLPPFSVMISIVAMASPAPLTMXPILPSISMYTXLREFAS 756
T D P PPP S FSV+ + P P+T P P +S + LRE S
Sbjct: 76 TSDPPPPPPPSTPTQ----FSVLRKVPT--GPDPITSDPPPPPLSEFPVLREVPS 124
>03_02_0922 -
12417328-12417816,12417929-12418399,12418568-12418663,
12418746-12418927,12419027-12419486
Length = 565
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 675 GHYGYHHAEWWQTCQLPRPWRWGWTITSFCSFE 577
GH W +P PW+ GW+ S C E
Sbjct: 90 GHVRVVRGRPWPPAAVPDPWQRGWSAASGCCRE 122
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 457 CFGGFSLHAETIPFAMVAQLTIPPKTLTKIVFTLGSDSKIFKAAETCDCPTPPPRS 624
C G +S A+ + + P T T F S + ++ + PTPPP S
Sbjct: 14 CCGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRGVASSSSSSLLPTPPPSS 69
>05_05_0133 +
22614219-22614651,22614767-22615671,22615918-22616224,
22616307-22616380
Length = 572
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -2
Query: 719 DGSIGCMVNGAGLAMATMDIITLNGGKPANFLD----LGGGVGQSQVSAAL 579
DG +V GAG ++ ++GGK +D GGGVG VS L
Sbjct: 20 DGEEVMVVGGAGEVAVAARVVKVDGGKVVVAMDEDAAAGGGVGVGVVSDLL 70
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -2
Query: 722 MDGSIGCMVNGAGLAMATMDIITLNGGKPANFLDLGGGVGQSQVSAALKILESDPKVKTI 543
MD ++ C NG+ ++ M ++L+G + FL +S V A + L+ T+
Sbjct: 69 MDSTLNCRANGSLFDVSHMCGLSLHGRQAIPFL-------ESLVVADVAALKDGTGTLTV 121
Query: 542 FVNVFGGIVNCATI 501
F N GG ++ + +
Sbjct: 122 FTNDRGGAIDDSVV 135
>04_01_0503 + 6594896-6595804
Length = 302
Score = 27.9 bits (59), Expect = 9.5
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +1
Query: 544 IVFTLGSDSKIFKAAETCDCPTPPPRSRKLAGLPPFSVMISIVAMASPAPLTMXPILPSI 723
I+FT + + DCP+PPP + + PP S +I + L + LPS
Sbjct: 23 ILFTGATSKDTTNPFTSLDCPSPPPSA---SPSPPSS---AINSTFQSNVLALLDDLPSA 76
Query: 724 SMYTXLREFASLSRG 768
+ T FASLSRG
Sbjct: 77 AGPTG---FASLSRG 88
>01_02_0025 +
10310497-10310714,10311714-10311940,10312342-10312453,
10312543-10312597
Length = 203
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 700 WLMVQDLPWPLWISS 656
W+MV D+PW L++SS
Sbjct: 177 WMMVGDVPWELFLSS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,155,561
Number of Sequences: 37544
Number of extensions: 434154
Number of successful extensions: 1390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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