Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A05
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    45   1e-05
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    28   1.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.2  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   3.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   6.7  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    25   6.7  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 35/131 (26%), Positives = 60/131 (45%)
 Frame = -3

Query: 474 ICFLGGPILMRAAWYTAGVVGGLSTIAVCAPSGEFLNMRAPLAMGLGAVFAASLAGMFLP 295
           I F    I++ A + T GV   L+     +   +F  +   L + L ++    L   F+P
Sbjct: 140 ITFFSARIILEAVFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVP 198

Query: 294 PTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 115
            T                +VF G++L+DT +I+ R        + P + I S++ +YLD 
Sbjct: 199 STPFIDMAFAGFGT----LVFCGYILFDTYNILHR--------YSPEEFIMSSLMLYLDF 246

Query: 114 LNIFMRIAMIL 82
           +N+F+RI  IL
Sbjct: 247 INLFIRILQIL 257


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 224 NPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP 337
           +PP+T KPP  + E+NP+   L   + + +   ++ AP
Sbjct: 178 SPPSTAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAP 215


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 430 HCWCSWWSE-YNCSVCTIWRVLEHACSTCYGSRSCVCC 320
           H +C+  SE +N ++  I+R   + C TCY ++  V C
Sbjct: 341 HHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKC 378


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
 Frame = -2

Query: 460  WPNPDACSLVHCWCSWWSEYNCSVCTI------WRVLEHACSTCYGSRSCVCCISGWDVS 299
            W  PD  S VH      SE  CS+C        WR    AC        CV  +   ++ 
Sbjct: 2536 WMLPDTTSNVHLEKDNTSEL-CSLCDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIK 2594

Query: 298  TTY*C 284
            T Y C
Sbjct: 2595 TCYEC 2599


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 315 EMQQTQLLDP*QVEHACSRTLQMVHTLQLYS--DHQLH--QQCTKLHASGLGHQGS 470
           E ++   L+P  V   CSRT++ V TL L +  DH +       K H  GL ++ S
Sbjct: 517 EAKELPKLNPVWVRANCSRTIEPVKTLLLLAKPDHTVKTTTPARKQHIRGLSYEQS 572


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 200 IDCVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPR 340
           I   S+   P +T  PPY +S+  P  + L G  N+    +    PR
Sbjct: 146 ISSASFLSVPQST--PPYLVSQPTPLNKFLAGAENVDIPHSLRPVPR 190


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -2

Query: 418 SWWSEYNCSVC-----TIWRVLEHACSTCYGSRSCVCCI 317
           +W S   C+ C     T +  L H C++C+   +C+  I
Sbjct: 341 TWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSI 379


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +2

Query: 401 VLRPPTTPAVYQAARIRIGPPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEP 580
           +L P  +  ++         P  ++G   A   P+   H N  A   G     L+ +PE 
Sbjct: 571 LLHPSCSGHIFMKYTSDFNTPPPEMGVRVASEFPMSFTHLNDHAVKYGPSENTLSLIPEL 630

Query: 581 IIXP-NVTIMDIH 616
           ++ P  VT  ++H
Sbjct: 631 LLSPIKVTDFNLH 643


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 540  GFGAKQLAWMA---HTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTI 397
            GFGA  + WM     T  +G +  P   + GP L RA W   G++  +  I
Sbjct: 1229 GFGA--IKWMHVFWGTSNVG-IFLPWAGIAGPYLSRALWLWLGILDSIQGI 1276


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 474 ICFLGGPILMRAAWYTAGVVGGLSTIAVCAPSG 376
           IC L  P  +R     A  + GL  + VCAP+G
Sbjct: 152 ICELKIPTTLRELVQRAKELTGLQYVQVCAPNG 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,347
Number of Sequences: 5004
Number of extensions: 63425
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)