Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_A05
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical pr... 203 7e-53
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 37 0.010
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 31 0.50
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 29 2.0
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 2.0
Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical pr... 29 2.7
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 4.7
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas... 28 6.2
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal... 28 6.2
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal... 28 6.2
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal... 28 6.2
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 27 8.2
U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U88168-4|AAC24402.1| 342|Caenorhabditis elegans Hypothetical
protein K11H12.8a protein.
Length = 342
Score = 203 bits (496), Expect = 7e-53
Identities = 100/196 (51%), Positives = 127/196 (64%), Gaps = 8/196 (4%)
Frame = -3
Query: 618 GWMSIIVTLGXMIGSGMVVRGMEYTPGFGAKQLAWMAHTGIMGAVIAPICFLGGPILMRA 439
G MS+ T+ MI SGM+ R ++Y AK LAW H G++GAV AP+CF+ GP+L RA
Sbjct: 148 GMMSLFGTMAAMIASGMLARSIDYESTV-AKHLAWALHCGVLGAVFAPLCFMAGPVLTRA 206
Query: 438 AWYTAGVVGGLSTIAVCAPSGEFLNMRAPLAMGLGAVFAASLAGMFLPPTXXXXXXXXXX 259
AWYTAG+VGGLS A+ APS +FL M PLAMG G VF A++ FLPP
Sbjct: 207 AWYTAGIVGGLSATAITAPSEKFLMMSGPLAMGFGVVFVANIGAFFLPPGSALGASLASI 266
Query: 258 XXXXXLIVFGGFLLYDTQSIIKRAEMHPP----YG----FKPYDPINSAISVYLDVLNIF 103
LI+F FLLYDTQ ++K+AE HP YG + +DPIN+ +S+Y+DVLNIF
Sbjct: 267 VVYGGLILFSAFLLYDTQRLVKKAENHPHSSQLYGSDMQIRSFDPINAQMSIYMDVLNIF 326
Query: 102 MRIAMILSGAGGNRRK 55
MR+ MI+ G GNRRK
Sbjct: 327 MRLVMIMGGMNGNRRK 342
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = -3
Query: 171 YGFKPYDPINSAISVYLDVLNIFMRIAMILSGA 73
Y F P D I + +S+Y+D+LN+F+RI I++ A
Sbjct: 242 YRFSPEDYICACVSLYMDILNLFIRILQIVAEA 274
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 206 CVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPRPI 346
C+ PP + PP L Y PAP +PA A AP P+
Sbjct: 44 CIPTAAAPPMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPV 90
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.9 bits (64), Expect = 1.5
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Frame = +2
Query: 215 YNKNPP-NTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP-RPIASGARMFKNSPDGA 388
YN PP T P YNP P+ + P N AP +P S P G
Sbjct: 196 YNPQPPPKTGYPTNPRVPYNP-PQPNYTRQ--PTYPEDNRAPYKPTRSPNTPPPRQPSGG 252
Query: 389 HTAIVLRPPTTPAVYQAAR-IRIGPPRKQIGAMTAPIIP 502
+ + PP++P +Y R GP + TAP +P
Sbjct: 253 YDSDGQTPPSSPRIYNTRRPNNHGPGYPEDQVPTAPPVP 291
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 171 YGFKPYDPINSAISVYLDVLNIFMRIAMI 85
Y P D I +A+ ++LD+LNIF+ + I
Sbjct: 211 YELSPEDYIFAAMEIFLDILNIFLMLLNI 239
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 403 YNCSVCTIWRVLEHACSTCYGSRSCVCCIS 314
++C+V T H CST G + +CC+S
Sbjct: 1913 FSCTVLTNGCPATHYCSTMPGQKKGICCVS 1942
>Z83127-3|CAB05629.2| 291|Caenorhabditis elegans Hypothetical
protein T23F6.3 protein.
Length = 291
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -2
Query: 397 CSVCTIWRVLEHACSTCYGSRSCVCCISGWDVSTTY-*CSWCR 272
C+VC V C+ C C C+ W S+T C CR
Sbjct: 210 CTVCFETPVDPQGCNRCMNVIGCKTCVQRWHRSSTQPSCPLCR 252
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.3 bits (60), Expect = 4.7
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 537 FGAKQLAWMAHTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTIAVCAPS-----GE 373
FG+ Q + TG+ G A GG A +AG+ G S A AP+ G
Sbjct: 49 FGSAQPS-TGSTGLFGNSTATGSMFGGSSAAAPAPASAGIFGN-SGAAAPAPASTSIFGS 106
Query: 372 FLNMRAPLAMGLGAVFAASLAGMF 301
N AP + GA ++ AGMF
Sbjct: 107 SANSAAPATVTFGASAPSAGAGMF 130
>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
protein.
Length = 1237
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 185 SARLIIDCVSYNKNPPNTIKPPYKLSE 265
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform b protein.
Length = 1234
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 185 SARLIIDCVSYNKNPPNTIKPPYKLSE 265
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform a protein.
Length = 1160
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 185 SARLIIDCVSYNKNPPNTIKPPYKLSE 265
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
calcium atpase protein3, isoform c protein.
Length = 1137
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 185 SARLIIDCVSYNKNPPNTIKPPYKLSE 265
+A+L++DC+S N + + + PP +L E
Sbjct: 467 TAKLMMDCISINSSYSSQVIPPKQLGE 493
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 458 PPRKQIGAMTAPIIPVCAIHANCLAPNPGVYSIPLTTMPEPIIXPNVTI 604
PPR + +I A L+PN + SI + PEPI+ +T+
Sbjct: 427 PPRSIKPELRFDLIRKVGESAKLLSPNQTLKSIGIAINPEPIVVEAMTV 475
>U46753-9|AAA85765.1| 226|Caenorhabditis elegans Hypothetical
protein C34F11.1 protein.
Length = 226
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 397 CSVCTIWRVLEHACSTCYGSRSCVCCISGW-DVSTTY*CSWCR 272
C++C V C C C C+ W D S + C CR
Sbjct: 155 CTICFEKPVDPRGCPKCLKVIGCKKCVKKWFDTSASKACPLCR 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,223
Number of Sequences: 27780
Number of extensions: 384297
Number of successful extensions: 1194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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