Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_A02
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.52 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 293 FKCSALYMLVNIIQLKLRHFKIAKNSGYTRNVSTFIQNYIMLFYKYPFNDTHTDFVFRLQ 472
           F    L++L+  I + +  F + KN    RN+S   + Y  +F  Y  N    DF+  +Q
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDNFRNIS---EKYQEIFNGYFLNSESKDFIDFIQ 140


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 366 FFAILKWRNFNCIMFTSI 313
           F AI++W +F  ++FT I
Sbjct: 404 FAAIIEWLSFFIVIFTYI 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,914
Number of Sequences: 438
Number of extensions: 3806
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)