Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P24
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    60   4e-10
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ...    38   0.001
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    38   0.002
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    30   0.33 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.77 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   5.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   9.5  

>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +1

Query: 160 ESTIRNKLLTILESKHVQVINESYMHN-------VPKGAETHFKVVVVSEKFDGLPLIKR 318
           +  I   L   L++  + + N+SY H+       VP   ETHF++ +VS +F G+  + R
Sbjct: 12  QDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVAR 71

Query: 319 HRLVNELLAEELQNGVHALSIV-AKTPKQ 402
           HRLV  LL +E   G+HAL I  +KTP +
Sbjct: 72  HRLVYGLLKDEFDGGLHALQITSSKTPDE 100


>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 80

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 21/64 (32%), Positives = 37/64 (57%)
 Frame = +1

Query: 193 LESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHA 372
           LE  H+++       ++  G   +F+V++VS  F+G   + RHRLVN  L E +++ +HA
Sbjct: 15  LEPTHIEI------QDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKD-IHA 67

Query: 373 LSIV 384
            + V
Sbjct: 68  FTQV 71


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +1

Query: 238 NVPKGAETHFKVVVVSEKFDGLPLIKRHRLVNELLAEELQNGVHALSI 381
           +V  G  + ++V + S+ F G   + +HRLVN +L EE++N +H L++
Sbjct: 53  DVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRN-MHGLNL 99


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +1

Query: 163 STIRNKLLTILESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLIKRHRLVN 333
           +T+   L   L ++  Q I+ S MHN  K  +T + V+ VSE  DG  LI++HR ++
Sbjct: 436 NTVTEDLWAALSAESGQDIS-STMHNWTK--KTGYPVLSVSETNDGELLIEQHRFLS 489


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 591 CIVWCKDGCYYYDLXRLFII 650
           C++WC D  +Y+ L  +F+I
Sbjct: 209 CVLWCLDDYWYFSLFSMFMI 228


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 311 IRGK-PSNFSETTTTLKCVSAPFG 243
           +RGK P N S +    KC S PFG
Sbjct: 737 LRGKIPENVSSSELIKKCASNPFG 760


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/93 (22%), Positives = 36/93 (38%)
 Frame = +1

Query: 169 IRNKLLTILESKHVQVINESYMHNVPKGAETHFKVVVVSEKFDGLPLIKRHRLVNELLAE 348
           IRN+LL I  + +    N  Y+       E   K  +  +K   + L  +   +++LLA 
Sbjct: 395 IRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQGDRMSQLLAN 454

Query: 349 ELQNGVHALSIVAKTPKQWEESDKLVENSPNCR 447
                    ++  K    W E  KL  +  N +
Sbjct: 455 ITSINERKENLTDKRKSLWREEAKLKSSIENVK 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,483
Number of Sequences: 5004
Number of extensions: 45743
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)