Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P24
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 148 SGIVESTIRNKLLTILESKHVQVIN 222
           SG V +T RN+ L  L  ++  V+N
Sbjct: 364 SGRVNNTQRNEYLLALSDRNQNVLN 388


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 100 MLRFFQHRTIRNMSSASGIVESTIRNKLLTILESKHVQVINESYMHNVPK 249
           ++R  Q++   N  S+  ++  T+R K  T     H     +S  H  PK
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPK 407


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 100 MLRFFQHRTIRNMSSASGIVESTIRNKLLTILESKHVQVINESYMHNVPK 249
           ++R  Q++   N  S+  ++  T+R K  T     H     +S  H  PK
Sbjct: 358 VMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSEEHLTPK 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,481
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)