Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_P18
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09) 182 3e-46
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05) 124 9e-29
SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_10701| Best HMM Match : DSPc (HMM E-Value=0) 41 9e-04
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 40 0.001
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26) 40 0.001
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 40 0.002
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07) 39 0.005
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
Length = 195
Score = 182 bits (443), Expect = 3e-46
Identities = 97/189 (51%), Positives = 124/189 (65%)
Frame = +3
Query: 87 STAMFARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGVV 266
S+++ ARV FYPTLL+NV ME SRRWYDRID TVILGALPF+ +T++L EEENV+ VV
Sbjct: 14 SSSVGARVLFYPTLLWNVVMEG-GSRRWYDRIDSTVILGALPFKSLTQKLVEEENVRAVV 72
Query: 267 SMNETYELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLS 446
++NE +E + F N +E W E V+ L+LAT D AP+ D L EGV FI
Sbjct: 73 TLNEEFETKHFCNTSEEWSEWGVKQLRLATVDFGNAPSLDNLSEGVKFIEEI-------- 124
Query: 447 GVPADVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHILLHTK 626
+ +VYVHCKAGR RSATLV CYLM +P EA +++S+RPHI L ++
Sbjct: 125 -------RSKGDSVYVHCKAGRGRSATLVACYLMKNMALNPEEAHLFIKSKRPHIRLASQ 177
Query: 627 QWEALDIFH 653
QW A+ FH
Sbjct: 178 QWSAVQQFH 186
>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
Length = 881
Score = 124 bits (298), Expect = 9e-29
Identities = 73/149 (48%), Positives = 92/149 (61%)
Frame = +3
Query: 102 ARVTFYPTLLYNVFMEKVTSRRWYDRIDDTVILGALPFQGMTKQLKEEENVKGVVSMNET 281
ARV F+P+LL+ V E SRRW+DRID TVILGALPF+ T++L +E NVKGV+++NE
Sbjct: 81 ARVLFFPSLLWIVATES-RSRRWFDRIDSTVILGALPFKSQTQKLIDE-NVKGVITLNEE 138
Query: 282 YELQLFSNDAERWREHKVEFLQLATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPAD 461
+E + N + W V L+LAT D AP+ +L EGV FI D + G
Sbjct: 139 FETKHLCNSKQEWFAWGVTQLRLATVDFGNAPSFAQLLEGVKFIE-----DMRSKG---- 189
Query: 462 VGQINTGTVYVHCKAGRTRSATLVGCYLM 548
+VYVHCKAGR RS TLV CYLM
Sbjct: 190 ------DSVYVHCKAGRGRSTTLVACYLM 212
>SB_36904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 480 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRP 605
G V +HC+AG R+ TL+ CYL+ + +S EAV ++R RP
Sbjct: 237 GAVAIHCRAGLGRTGTLIACYLIKQYKFSAAEAVGWLRICRP 278
>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 459 DVGQINTGTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHI 611
D + +V VHC AG +RSAT+ Y+M G S +EA ++++ +RP I
Sbjct: 91 DEARSRGSSVLVHCHAGVSRSATVTVAYVMQHLGLSLNEAYQFVKEKRPTI 141
>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
Length = 365
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 480 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRR 602
G V VHC+AG +RSAT+ YL+ + + EA EY++ RR
Sbjct: 257 GRVLVHCQAGISRSATICLAYLISRLNFRLDEAYEYVKKRR 297
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 480 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRRPHILLHTKQWEAL 641
G V VHC AG +RSA+LV YLM + +A + ++ +RP I +T W+ L
Sbjct: 70 GKVLVHCIAGVSRSASLVIAYLMKYQRLNLRDAHKLVQDKRPLIRPNTGFWKEL 123
>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
Length = 1418
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Frame = +3
Query: 366 FEAPNQDKLFE-GVVFI-NRFLPLDNKLSGVPADVGQINTGT-VYVHCKAGRTRSATLVG 536
+ A N ++L E GV ++ N +DN +G + G+ V VHCK G +RSA+ V
Sbjct: 287 WNASNLEELKENGVEYVLNITKEIDNFFAGTFTYFNIRDKGSKVLVHCKRGISRSASTVI 346
Query: 537 CYLMMKNGWSPHEAVEYMRSRRPHILLHTKQWEAL 641
Y M + G S ++ +++++SRR + + W+ L
Sbjct: 347 AYGMKEYGTSLNDTMKHVKSRRQCVNPNQGFWKQL 381
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +3
Query: 480 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRR 602
G VYVHCK G +RSATLV YL+ A+ +RS+R
Sbjct: 487 GRVYVHCKEGISRSATLVLAYLIKHQQMGLTNALRTVRSKR 527
>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
Length = 324
Score = 38.7 bits (86), Expect = 0.005
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Frame = +3
Query: 171 YDRIDDTVILGALP-FQGMTKQLKEEENVKGVVSMNETYELQLFSNDAERWREHKVEFLQ 347
Y +I + + LG+ P + LK + + V+S+ ++Q + R+ ++ L
Sbjct: 151 YCKIFENIWLGSCPRLRSHIMDLKSQ-GITAVISLQTASDIQKHCSGIYRYNQN----LP 205
Query: 348 LATTDIFEAPNQDKLFEGVVFINRFLPLDNKLSGVPADVGQINTG-TVYVHCKAGRTRSA 524
+ +++ ++ + ++ ++N GV G +N G VYVHC G RS
Sbjct: 206 ITLKKLYKEEGISYIWLPMEDLSTESRIENLPQGVYLLHGLLNNGHRVYVHCNGGVGRST 265
Query: 525 TLVGCYLMMKNGWSPHEAVEYMRSRRP 605
+V +LM WS + + S+RP
Sbjct: 266 AIVCGFLMYVLHWSLAKVQYNICSKRP 292
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 480 GTVYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYMRSRR 602
G V VHC G +RS+++ YL+ W+ EA +++ RR
Sbjct: 755 GCVMVHCNMGVSRSSSVTLAYLIKSKRWTLGEAYSFIKERR 795
>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 474 NTGTVYVHCKAGRTRSATLVGCYLMMKNGW-SPHEAVEYMRSRR 602
N +HCKAG+ R+ ++ YL+ + EA+EY + R
Sbjct: 58 NLNVAIIHCKAGKGRTGVMICAYLLHNGHFKDTKEAMEYYGNAR 101
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 486 VYVHCKAGRTRSATLVGCYLMMKNGWSPHEAVEYM 590
V VHC AG +RS ++ Y+M + S +AV M
Sbjct: 515 VLVHCLAGVSRSIAVILAYIMKSDQVSLDDAVNKM 549
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 582 PPLRGV-TNRFSS*DSSPRAWR-SSSYPPCSERIR 484
PP G NRFS+ +S P AWR + S+ P S +R
Sbjct: 170 PPSYGERNNRFSAVNSKPLAWRLNLSFTPRSRTLR 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,906,771
Number of Sequences: 59808
Number of extensions: 575777
Number of successful extensions: 1635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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