Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_P16
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81108-3|CAB03239.1| 152|Caenorhabditis elegans Hypothetical pr... 244 4e-65
AF007861-1|AAB66721.1| 147|Caenorhabditis elegans ce-Mago protein. 242 1e-64
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 30 1.3
AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical ... 30 1.7
AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical ... 29 3.9
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF043702-8|ABD94094.1| 156|Caenorhabditis elegans Hypothetical ... 28 5.1
AC024090-4|AAK67221.1| 300|Caenorhabditis elegans Hypothetical ... 28 5.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.1
Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70037-1|CAA93878.1| 493|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical ... 28 6.8
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z81108-3|CAB03239.1| 152|Caenorhabditis elegans Hypothetical
protein R09B3.5 protein.
Length = 152
Score = 244 bits (597), Expect = 4e-65
Identities = 110/140 (78%), Positives = 121/140 (86%)
Frame = +3
Query: 183 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 362
+ DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V V+ ELK
Sbjct: 8 AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLSELK 67
Query: 363 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 542
RII DSEIM EDD WP+PD++GRQELEI+ EHISFTT K G+L DVN S+DP+GLR
Sbjct: 68 RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 127
Query: 543 FYYLVQDLKCLVFSLIGLHF 602
FYYLVQDLKCLVFSLIGLHF
Sbjct: 128 FYYLVQDLKCLVFSLIGLHF 147
>AF007861-1|AAB66721.1| 147|Caenorhabditis elegans ce-Mago protein.
Length = 147
Score = 242 bits (593), Expect = 1e-64
Identities = 109/140 (77%), Positives = 120/140 (85%)
Frame = +3
Query: 183 STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELK 362
+ DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V V+ ELK
Sbjct: 3 AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSELK 62
Query: 363 RIIIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRG 542
RII DSEIM EDD WP+PD++GRQELEI+ EHISFTT K G+L DVN S+DP+GLR
Sbjct: 63 RIIEDSEIMQEDDDNWPEPDKIGRQELEILYKNEHISFTTGKIGALADVNNSKDPDGLRS 122
Query: 543 FYYLVQDLKCLVFSLIGLHF 602
FYYLVQDLKCLVFSLIGLHF
Sbjct: 123 FYYLVQDLKCLVFSLIGLHF 142
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 504 DVNQSRDPEGLRGFYYLVQDLKCLVFSLIGL 596
++ Q P L FYY KCL F+ +GL
Sbjct: 477 EMTQGEGPSALTRFYYDASQRKCLAFNYLGL 507
>AL132859-5|CAB60490.2| 337|Caenorhabditis elegans Hypothetical
protein Y39C12A.5 protein.
Length = 337
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -3
Query: 251 KFEKFVAKLSL---VSNIISYVKIRRHFAQSFKFILENFHFSGSTDTLKENYSMMRKPSN 81
KF ++ ++ + NI+SY+ + + + K+ +N S T +L E Y +
Sbjct: 148 KFTSYILHFAICDVIMNIVSYIFLIWNQKLNRKYYHDNRRVSNHTYSLGERYQISENIRV 207
Query: 80 ANYQVKLISELNFXITLACLI 18
Y + +S L F I + C++
Sbjct: 208 FKYYTRYVSILTFFI-IVCIL 227
>AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical
protein K12C11.7 protein.
Length = 166
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 284 GITQFPVRPEFKFEKFVAKLSLVSNIISYVKIRRHFAQSFKFILENF 144
GI + P PE +A SL + + RHFA SF F L+NF
Sbjct: 74 GIWEIPEEPEPSPRGKLA--SLAPFTMESISSWRHFASSFLFFLQNF 118
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 477 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 566
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 477 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 566
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>AF043702-8|ABD94094.1| 156|Caenorhabditis elegans Hypothetical
protein W03D8.5 protein.
Length = 156
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 164 KFILENFHFSGSTDTLKENYSMMRKPSNANYQVKLI 57
K I+ N +G D +KE + + KP+ + VKLI
Sbjct: 119 KLIIVNSLLTGDEDKVKELFKQITKPTGDSVHVKLI 154
>AC024090-4|AAK67221.1| 300|Caenorhabditis elegans Hypothetical
protein C52E2.7 protein.
Length = 300
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = -3
Query: 242 KFVAKLSL-VSNIISYVKIRRHFAQSFKFILENF---HF-SGSTDTLKENYSMMRKPSNA 78
+F+A+ + + +II+ I+ + A+ F F N HF +GS +LKE M + +
Sbjct: 176 EFLAECVIGLDDIIASNAIKTNIARPFSFSNLNLFLRHFINGSNPSLKEMNIAMEEGTFE 235
Query: 77 NYQVKLISELNF 42
NY+ L++ +N+
Sbjct: 236 NYEKVLLNGINY 247
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 477 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 566
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 477 TTSKTGSLVDVNQSRDPEGLRGFYYLVQDL 566
T + G L+D+N+ RDP R ++Y ++++
Sbjct: 263 TRTLQGHLMDMNEWRDPTVTRRYFYAIKEI 292
>Z81463-8|CAB03849.2| 346|Caenorhabditis elegans Hypothetical
protein C06B8.6 protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 533 SSWVLLFSSRP*MSSILFNWATF 601
S WV++F + P MSS+ F+ TF
Sbjct: 43 SGWVIVFKTPPSMSSVKFSLLTF 65
>Z70037-1|CAA93878.1| 493|Caenorhabditis elegans Hypothetical
protein T27D12.1 protein.
Length = 493
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 338 VNIGFFTYHCIVFIVGIIGITQFPVRPEF--KFEKFVAKLSLVSNIISYVKI 189
+ +GF+ + + F+ G FPV F K+ F VS++++YV++
Sbjct: 127 IRMGFYYFLAVRFLQGFAFAANFPVIGSFCAKWSYFKQNGLFVSSLVAYVQL 178
>AL132898-2|CAC14413.1| 349|Caenorhabditis elegans Hypothetical
protein Y59A8B.3 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 348 LHKGEHRLLYVSLYRFYSWNYWHNAVSRQAG-IQIREIRGQTFPCVQHNIV 199
+ K + RL YV + Y + + + I+ R++ + PCV H+I+
Sbjct: 131 IFKSKRRLFYVMFHYVYGFTFTLPLLIHPPDQIEARKMAKEALPCVPHSII 181
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 405 LWPQPDRVGRQELEIVIGEEH 467
L+PQP V + LE +IGEEH
Sbjct: 285 LFPQPGFVQFENLEHIIGEEH 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,372,228
Number of Sequences: 27780
Number of extensions: 274444
Number of successful extensions: 711
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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