Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P15
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    49   7e-07
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +2

Query: 428 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 577
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 578 WVEGDDPAADHRRWAPQCPF 637
           W + DDP  +H   +P CP+
Sbjct: 78  WEDDDDPLKEHITHSPSCPW 97



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 491 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 637
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 162 NKLYILSFRWEFHFQNIILHIHIMLGCIVLKTIMNEKGNLQTAAFCSR 19
           N+L++ SF   FH +    H+H +     L  IM+   +L+   FCSR
Sbjct: 443 NRLFLKSFAHPFHLER--YHLHAVAAMGGLYQIMSST-HLKNLFFCSR 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,921
Number of Sequences: 5004
Number of extensions: 54170
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)