Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P15
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   68   6e-12
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   57   2e-08
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   55   5e-08
SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)          29   4.7  
SB_42755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 428 DMRREEERLKTFDQWPVTF-LTPEQLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDDPAA 604
           D++ E  RL TF  WP +  + P +L+  GFYYLG  D V C  C V +  W   D P  
Sbjct: 127 DLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWV 186

Query: 605 DHRRWAPQCPFV 640
           +H +W+P CP V
Sbjct: 187 EHEKWSPHCPLV 198


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 419 DMPDMRREEERLKTFDQWPVTFLTPE-QLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDD 595
           D  D+     R++TF+ WP T      +LAR GF + GR D V C  CK  + +W   D 
Sbjct: 128 DPNDLNLVGARVRTFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDR 187

Query: 596 PAADHRRWAPQCPFV 640
           P   HR + P CP +
Sbjct: 188 PIESHREFYPDCPLL 202


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +2

Query: 428 DMRREEERLKTFDQWPVTFL----TPEQLARNGFYYLGRGDE---VCCAFCKVEIMRWVE 586
           +M  E++RL+TF  WP   +    T E++A  GFY+    D+     C  C  E+  W  
Sbjct: 9   EMNMEKKRLETFKDWPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 587 GDDPAADHRRWAPQCPFVR 643
            DDP  +H++ +P+C FV+
Sbjct: 69  EDDPWQEHKKHSPKCEFVK 87


>SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 586 FDPPHNFYLTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQ 452
           F+  H   L   T H V + +V  S  G+ ++  K NG +++CFQ
Sbjct: 288 FEAEHGLSL--QTQHWVTSFKVSFSQLGRAYQWYKVNGSIMRCFQ 330


>SB_42755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 96  IMLGCIVLKTIMNEKGNLQTAA-FCSRCRGYNA 1
           +  GC++L+TIM EK N      +     GYN+
Sbjct: 70  VTFGCLILQTIMKEKNNTADGVLYTELLDGYNS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,015,761
Number of Sequences: 59808
Number of extensions: 422066
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)