Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P13
         (338 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase, ...    33   1.3  
UniRef50_Q18XM4 Cluster: Transcriptional regulator, AraC family;...    32   2.2  
UniRef50_Q2BDV3 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;...    31   6.7  
UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  

>UniRef50_Q8I5A4 Cluster: Pre-mRNA splicing factor RNA helicase,
            putative; n=1; Plasmodium falciparum 3D7|Rep: Pre-mRNA
            splicing factor RNA helicase, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 1168

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 7    ADAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVI--HNISETFCYD 162
            A+ I +  KG  KEK A N    +I     +  LF N+YK    +N S +FCYD
Sbjct: 985  ANNIFYVQKG--KEKEAENIKKMFIIEGGGDFLLFLNIYKQCEENNFSTSFCYD 1036


>UniRef50_Q18XM4 Cluster: Transcriptional regulator, AraC family;
           n=2; Desulfitobacterium hafniense|Rep: Transcriptional
           regulator, AraC family - Desulfitobacterium hafniense
           (strain DCB-2)
          Length = 325

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 4   PADAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETF 153
           P+D I H      K   A N FLF  F++ C+ T   N Y  + N  ++F
Sbjct: 107 PSDGITHGVCRADKALHAVNIFLFPEFFQTCSDTTGANHYFDVLNTIQSF 156


>UniRef50_Q2BDV3 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 337

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 142 IYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSKHLSVNEVSH 11
           IY   PYI+Y     Y   KKY  G++  PF   + L+  E+SH
Sbjct: 146 IYIRAPYISYPHETDYVDTKKYLSGLN--PFATKRPLNAVEISH 187


>UniRef50_Q3L0S2 Cluster: Putative host-specificity protein; n=4;
           Lactobacillus phage Lc-Nu|Rep: Putative host-specificity
           protein - Lactobacillus rhamnosus Lc-Nu-like prophage
          Length = 989

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 37  VSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFCY 159
           +S E  AT  ++F  F    NVT ++N     HNI  ++ Y
Sbjct: 847 ISAENAATKKYVFSTFKSTDNVTYYWNNTTAYHNIDFSWGY 887


>UniRef50_Q23DP0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 700

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 67  FLFYIFYKACNVTLFYNLYKVIHNISETFCY-DCKLKCKF 183
           F  Y  Y   N    ++LY+ ++++ + F Y D K++CKF
Sbjct: 321 FSGYFIYSTLNHDKAFSLYEYLYSLDKPFIYSDRKVQCKF 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,164,265
Number of Sequences: 1657284
Number of extensions: 2677198
Number of successful extensions: 6466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6464
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)