Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P11
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical pr...    34   0.13 
Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81137-8|CAB03467.1|   73|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    28   6.3  
AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin r...    28   6.3  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    28   6.3  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    28   6.3  
Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.5 protein.
          Length = 233

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 297 NGNSVFITLPSLSFTAHGFQKRKIYGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITY 121
           NGN+V      L +       R  YG  ++CH++ ++ + K    T + Y Y  GS T+
Sbjct: 162 NGNTVACKSGCLGYNTDQECCRGAYGTPDKCHRSATAQMFKDACPTAYSYAYDDGSSTF 220


>Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.3 protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 297 NGNSVFITLPSLSFTAHGFQKRKIYGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITY 121
           NG +V      L +       R  YG  ++CH++ ++ + K    T + Y Y  GS T+
Sbjct: 162 NGKTVACKSGCLGYNTDQECCRGAYGTPDKCHRSATAQMFKDACPTAYSYAYDDGSSTF 220


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 323  FARNKNTENSTSNEADQSEDQ---KTK*KENNTPR 418
            F R  ++ NS SNE+  S+DQ   +T+ +E + PR
Sbjct: 1424 FVRRPHSRNSYSNESTSSDDQMNYRTRSRERSLPR 1458


>Z81137-8|CAB03467.1|   73|Caenorhabditis elegans Hypothetical
           protein W02D9.9 protein.
          Length = 73

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 148 INKYGLCSMFHYTTTFVFMASICAAVYFTLLESMGCKRQGRQRNENR 288
           + K  L S+F++   F+   S+CA+VY  +       R  R R   +
Sbjct: 4   VGKILLLSLFYHLAVFLCACSVCASVYLNVDNVEERVRNARMRESRK 50


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 225 YGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITYAL 115
           YGC   C  ++   +MK+G   I IY+  F  + Y +
Sbjct: 546 YGC---CGLSEEDAMMKYGKDNIIIYHNVFNPLEYTI 579


>AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin
           reductase homolog protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 225 YGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITYAL 115
           YGC   C  ++   +MK+G   I IY+  F  + Y +
Sbjct: 404 YGC---CGLSEEDAMMKYGKDNIIIYHNVFNPLEYTI 437


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 225 YGCTNRCHKNKSSGIMKHGTQTIFIYNYFFGSITYAL 115
           YGC   C  ++   +MK+G   I IY+  F  + Y +
Sbjct: 546 YGC---CGLSEEDAMMKYGKDNIIIYHNVFNPLEYTI 579


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 482 INILKLQFTIPYFSIIVHSFITYFNDFFLLI*SVF 586
           I++L +QF   YF+I    ++ YF  ++ LI  V+
Sbjct: 104 ISLLAVQFLYRYFAIFHEYYLKYFKGWYFLIWIVY 138


>Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical
           protein T27E7.9 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 145 LFFRFYYICTFRNVLIIPNFVFFTIW 68
           L+FRF +   F  +L+IP  +F T W
Sbjct: 89  LYFRFPHFYIFEFLLLIPLAIFVTTW 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,061
Number of Sequences: 27780
Number of extensions: 372871
Number of successful extensions: 1050
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)