Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P10
         (599 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75FV0 Cluster: Transcriptional regulator; n=2; Leptosp...    35   1.3  
UniRef50_Q0V463 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_Q6ZP04 Cluster: CDNA FLJ26776 fis, clone PRS03665; n=1;...    33   6.8  

>UniRef50_Q75FV0 Cluster: Transcriptional regulator; n=2; Leptospira
           interrogans|Rep: Transcriptional regulator - Leptospira
           interrogans serogroup Icterohaemorrhagiae
           serovarcopenhageni
          Length = 192

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -3

Query: 279 CFIIFFTQNDL*KQRRLQNSYKIRLNKICISKLPCLLLSPLRGTGDAPSLSGAETSPWRG 100
           C I   +Q    KQ++L+N  K+ LN I    L  LLL+P   + +         S WRG
Sbjct: 104 CLINVLSQYSSPKQQKLRNKLKLSLNSISKGILNSLLLNPQNYSKEISIHIQVLESSWRG 163

Query: 99  ASL 91
           A L
Sbjct: 164 AML 166


>UniRef50_Q0V463 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 816

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 98  APRHGDVSAPLRLGASPVPRSGLSKRHGSLDMHILLSLILY 220
           APR  +V+ P+    +P+P  G      SL  H+LL + +Y
Sbjct: 138 APRRDNVTTPVATTTAPIPTDGHIPAWASLPYHVLLQVFVY 178


>UniRef50_Q6ZP04 Cluster: CDNA FLJ26776 fis, clone PRS03665; n=1;
           Homo sapiens|Rep: CDNA FLJ26776 fis, clone PRS03665 -
           Homo sapiens (Human)
          Length = 277

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 PRHGDVSAPLRLGASPVPRSGLSKRHGSLDMHILLS 208
           PRH  +  P+ +  +P P + LS  HGSL     LS
Sbjct: 210 PRHSSLPPPMAISHTPHPATALSHPHGSLSCQTALS 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,482,382
Number of Sequences: 1657284
Number of extensions: 8977751
Number of successful extensions: 19590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19585
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)