Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P10
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0686 + 6049563-6050900                                           31   0.70 
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    31   0.93 

>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = -3

Query: 243 KQRRLQNSYKIRLNKICISKLPCLLLSPLRGTGDAPSLSG 124
           ++ ++Q + + +L K+  ++ P L+ +P RGTGD P  +G
Sbjct: 72  QRHQIQANARRKLTKLFPTRAPPLVAAPSRGTGDPPVSTG 111


>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 83  HHRSDAPRHGDVSAPLRLGASPVPRSGLSKRHGSLDMHILLSLILY 220
           HHR +       +APL  GA+P+  SG  + H   D+H+L +  L+
Sbjct: 7   HHRDEEEEAA--AAPLLAGAAPLGYSGHRRSHAG-DLHVLSAAFLF 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,485
Number of Sequences: 37544
Number of extensions: 206102
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)