Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P09
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    27   2.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   2.7  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    26   4.7  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    26   4.7  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    26   4.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   6.2  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    25   8.2  

>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 643 FVLYFRRKGYQLQIPFYLKHRTCISSFQ 560
           F+ YF   GYQ  +P Y K     ++FQ
Sbjct: 319 FISYFNIAGYQASVPIYAKELYHYNAFQ 346


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 421 LIKNFL--GGDNIHGDGNGKAKIEKFKVAFDFDFTVE 525
           +I+ F+  GGD + GDG G A I   +   D +FT++
Sbjct: 63  IIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLK 99


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 376 DITIKGHYSVYSGSPLIKNFLGGDNIHGDGNGKAKIEK 489
           DI     + V  G      +L     HG G+GKAK EK
Sbjct: 595 DIKYVDEFGVELGPKEAYKYLLSHQFHGKGSGKAKTEK 632


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 627 RK*RTKCFHRQAYERKLAYFNGYGRKAIR 713
           RK R   +  QA+  +  Y NGYGR++ R
Sbjct: 125 RKLRCAAYLWQAFTAECMYRNGYGRRSFR 153


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 29  SREKWLVSKYCLLYVRLPFVFVLRLMLTPYKNAAKAMQFAKK 154
           +RE +   KY  L +R      +R  LTPY+ + K ++  KK
Sbjct: 68  AREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 377 SQTSSILACRSSKLASNLLTVQSLTPLA--TPSTRVMFTRSSIATLKP 240
           SQ SSI   +  + + N   +     L+  TP    +FTR+SI  LKP
Sbjct: 305 SQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDSLFTRASIKPLKP 352


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 190 TGIPELDIPQIDPIQLKGFNVAILDLVNITLVDG 291
           + I ++ +  ++  + K FNV I  +V +TL DG
Sbjct: 68  SSIQDIHVDYVEETKEKKFNVGISVIVRVTLKDG 101


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 445 DNIHGDGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKMKYTYDVLGKMV 603
           DN+ G      + ++ + A    F  EK+G  L   +++ K  + Y+ +G+++
Sbjct: 162 DNVCGPSCQNQRFQRHEFAKVDVFLTEKKGFGLRADANLPKDTFVYEYIGEVI 214


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
 Frame = +1

Query: 406 YSGSPLIKNFLGG------DNIHGDGNGKA 477
           YSG P++K+FL        D   G G+GKA
Sbjct: 92  YSGQPIVKDFLNENYRHTFDKTFGKGSGKA 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,380
Number of Sequences: 5004
Number of extensions: 54727
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)