Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P09
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0918 + 12381662-12383118,12383249-12384707                       29   2.8  
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140...    29   3.7  
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847     28   6.4  
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    28   8.5  

>03_02_0918 + 12381662-12383118,12383249-12384707
          Length = 971

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +1

Query: 277 TLVDGVAKGVKDCTVNKFEANFDDLHASIELVCD------ITIKGHYSVYSGSPLIKNFL 438
           TL DG    +K  TV+    + D+    ++++        + +KG+Y   S   LI  F+
Sbjct: 705 TLRDGQPVAIKKLTVSSLVKSQDEFEREVKMLGKLRHRNLVALKGYYWTPSLQLLIYEFV 764

Query: 439 GGDNIH 456
            G N+H
Sbjct: 765 SGGNLH 770


>02_01_0211 -
           1406098-1406227,1406581-1406714,1407241-1407380,
           1407639-1407829,1408853-1409346
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -1

Query: 668 FISLTMEALCSLFPT*RLSAANTILPKTSYVYFIFSMLLLMNKSSPRFSTVKS 510
           F+S    A+C+L P   L   +  +  T +  F+ ++ LL+ + +PRF+ + S
Sbjct: 148 FVSRVCSAICALMPILTLYYGHMDVTVT-FSAFLIAISLLLQRGNPRFAQLTS 199


>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
          Length = 943

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +1

Query: 280 LVDGVAKGVKDCTVNKFEANFDDLHASIELVCDI------TIKGHYSVYSGSPLIKNFLG 441
           L DG    +K  TV+    + DD    ++L+  +       ++G Y   S   LI ++L 
Sbjct: 682 LRDGQPVAIKKLTVSSLVKSKDDFERQVKLLSKVRHHNVVALRGFYWTSSLQLLIYDYLP 741

Query: 442 GDNIH 456
           G N+H
Sbjct: 742 GGNLH 746


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 520 VEKRGDDLFIKSSIEKMKYTYDVL 591
           VE  G ++F  +S E+M YTYD L
Sbjct: 187 VEAIGGNVFASASREQMSYTYDAL 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,565
Number of Sequences: 37544
Number of extensions: 308142
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)