Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P09
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)             33   0.18 
SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)                     30   2.2  
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 566

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 511 DFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAADNL 621
           DFTV+K G   F    + K+ +T D LGK+ F  D L
Sbjct: 205 DFTVDKLGKLDFTDDKLGKLDFTQDKLGKLDFTEDQL 241



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 511 DFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAADNL 621
           DFT +K G   F    + K+ +T D LGK+ F  D+L
Sbjct: 265 DFTEDKLGKLDFTDDKLGKLDFTDDKLGKLDFTEDHL 301



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 460 DGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAA 612
           D  GK    + K+    DFT +K G   F    + K+ +T D LGK+ F A
Sbjct: 319 DKLGKLDFTEDKLG-SLDFTEDKLGSLDFTDDKLGKLDFTEDTLGKLDFTA 368



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 511 DFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAADNL 621
           DFT +K G   F +  +  + +T D LGK+ F  D L
Sbjct: 325 DFTEDKLGSLDFTEDKLGSLDFTDDKLGKLDFTEDTL 361



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 511 DFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAADNL 621
           DFT ++     F +  ++K+ +T D LGK+ F  D L
Sbjct: 245 DFTEDQLDKLDFTEDQLDKLDFTEDKLGKLDFTDDKL 281



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 436 LGGDNIHGDGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAAD 615
           LG  +   D  GK      K+    DFT +      F +  ++K+ +T D LGK+ F  D
Sbjct: 271 LGKLDFTDDKLGKLDFTDDKLG-KLDFTEDHLDKLDFTEDQLDKLDFTEDKLGKLDFTED 329

Query: 616 NL 621
            L
Sbjct: 330 KL 331


>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
          Length = 589

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +1

Query: 340 FDDLHASIELVCDITIKGHYSVYSGS-PLIKNFLGGDNIHGDGNGKAKIEKFKVAFDFDF 516
           F  L+   E     T +G   VY+G    ++ F G  +    GNG+ + E  ++      
Sbjct: 462 FKALYHRGEYFVSDTARGCIMVYNGQGAFVRQFGGWSSSMRRGNGRGRSEFGELTSPTGI 521

Query: 517 TVEKRGDDLFIKSSIEKMKYTYDVLGKMV 603
            +++ GD++ +     K    Y   G+ V
Sbjct: 522 VIDQSGDNILVCDVNSKSIQMYSTAGQFV 550


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -1

Query: 350 RSSKLASNLLTVQSLTPLATPSTRVMFTRSSIATLKPL 237
           RSS ++S++L+ QS   ++T ST  +  RS    L+PL
Sbjct: 703 RSSAMSSSILSSQSRASMSTTSTAFVPRRSRSKQLRPL 740


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 67   LCAFAICFCASAYVDTLQKCGKSDAVCQKKLLQSVLKSISKTGIPELDIPQIDPI 231
            +C  + C C S+Y  T  +  K D +    LL   L SIS +         I+P+
Sbjct: 1528 VCTESGCMCPSSYYGTYCENRKGDEIGCGSLLDGYLLSISNSAFSASSGTPINPV 1582


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 196 IPELDIPQIDPIQLKGFNVAILDLVNITLVDGVAKG-VKDCTVNKFEANFDDLHASIELV 372
           +P LD  Q DP    G  ++I   VN  L+  VA G   + T+        D H +++L+
Sbjct: 524 LPHLDEGQYDPQIFAGVQLSIERAVN--LIAAVANGYTPESTLEGMHLQIGDWHTAVKLL 581

Query: 373 CDITIKGHYSVYSGSPL 423
                K  YS  S   L
Sbjct: 582 ----FKRFYSAQSDGDL 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,328,874
Number of Sequences: 59808
Number of extensions: 372202
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)