Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P09
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin fam...    31   0.82 
U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin fam...    31   0.82 
U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin iso...    31   0.82 
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   7.7  

>U40938-4|AAK68283.1|  447|Caenorhabditis elegans Cyclophilin family
           protein 8, isoformb protein.
          Length = 447

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +1

Query: 385 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 471
           + GHY+ Y GS    +IK F+  GGD  HG+G G
Sbjct: 52  MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85


>U40938-3|AAA81696.1|  466|Caenorhabditis elegans Cyclophilin family
           protein 8, isoforma protein.
          Length = 466

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +1

Query: 385 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 471
           + GHY+ Y GS    +IK F+  GGD  HG+G G
Sbjct: 52  MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85


>U31078-1|AAC47130.1|  466|Caenorhabditis elegans cyclophilin
           isoform 8 protein.
          Length = 466

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +1

Query: 385 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 471
           + GHY+ Y GS    +IK F+  GGD  HG+G G
Sbjct: 52  MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 271 NITLVDGVAKGVKDCTVNKFEANFDDLHASI-ELVCD 378
           N  L++GV    +D   ++FE N  DLH  + E +CD
Sbjct: 18  NPELIEGVEGNSEDFKTDEFEKNLVDLHPELAEEICD 54


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 352 HASIELVCDIT-IKGHYSVYSGSPLIKNFLGGD 447
           +A++E  C++  + G YS Y GSP+ K  L  D
Sbjct: 543 YAALEASCELAELNGPYSTYEGSPVSKGQLQFD 575


>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
           protein F37H8.5 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
 Frame = +1

Query: 217 QIDPIQLKGF----NVAILDLVNI-TLVDGVAK---GVKDCTVNKFEANFDD 348
           Q+ PI  K F    N+ ++   N   L DG  K   G ++C++NKFE  F D
Sbjct: 96  QLYPIVFKNFANYVNIELVPFGNAKVLEDGTIKCQHGEEECSINKFEGCFID 147


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 296  ATPSTRVMFTRSSIATLKPL 237
            A PSTR   TRSS+AT+ P+
Sbjct: 1247 AQPSTRTTKTRSSLATVSPI 1266


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 296  ATPSTRVMFTRSSIATLKPL 237
            A PSTR   TRSS+AT+ P+
Sbjct: 1247 AQPSTRTTKTRSSLATVSPI 1266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,316
Number of Sequences: 27780
Number of extensions: 300022
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)