Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P09
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    29   0.058
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 463 GNGKAKIEKFKVAFDFDFTVEK--RGDDLFIKSSIEKMKYTYDVLGKMVFAADNLYVGNK 636
           G GK+ I  + +    D   EK  +  + +++     +K+      K+    +NL+ GNK
Sbjct: 144 GAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNP---AKVKLRFENLFDGNK 200

Query: 637 EQSASIVKLMNENWRIL 687
           E    + + +NEN  +L
Sbjct: 201 ELGEQMNRFINENSELL 217


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 149 WQTASLLPHFCKVST*AEAQKQMANAHKVNNILKPTIF 36
           W+   +L +  K  T AE +    N  K + + K T+F
Sbjct: 232 WEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKATLF 269


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 151 FGKLHRFCRIFVRCQHKPKHK 89
           +G LH F  + +   H P H+
Sbjct: 361 YGDLHNFGHVAISYIHDPDHR 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,242
Number of Sequences: 438
Number of extensions: 3780
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)