Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_P05
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 36 0.006
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 36 0.008
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 28 1.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 2.1
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 6.5
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 6.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 8.6
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.6
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.9 bits (79), Expect = 0.006
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = +2
Query: 368 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 547
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 548 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 649
L+I+ + +++ S +K K ++ F KS N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.008
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = +2
Query: 380 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 553
+QVKL Y WDQ+ V + + + QV +++ +++ ++ E K +L+
Sbjct: 2 HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57
Query: 554 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWS 661
L + IN+ +S W ++ +++VI L KSN WS
Sbjct: 58 SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWS 94
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 569 EPINVADSHWKQKTDKVVIFLAKSNPNTTW-SHM-TEIEKKFEDQRNNRLKPAETDXKD 739
EPI+ + ++ L+K P W SHM ++ +K+ E+ +L+ A+ D D
Sbjct: 202 EPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDWND 260
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 536 KDYLLVINKLLEPINVADSHWKQ 604
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 647 NTTWSHMTEIEKKFEDQRNNRLKPAETDXKD 739
NT W M +E++ + R + LKP D K+
Sbjct: 350 NTIWREMMAMERRTQAARLSGLKPVAADEKE 380
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 6.5
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 368 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 547
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 548 LVINKLLEPINVADSHWKQK 607
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 614 YLFFVSNDCLPHL 576
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 521 DNLENKDYLLVINKLL 568
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/94 (18%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 467 PKEQVYCKLTDKSMELHVDNLENKDYLLVIN----KLLEPINVADSHWKQKTDKVVIFLA 634
PK+ +C+L + + H++ L++K + L+ + + L +N +++
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYI 390
Query: 635 KSNPNTTWSHMTEIEKKFEDQRNNRLKPAETDXK 736
+T++ K+ ++ N L+ ET+ K
Sbjct: 391 SEQTQLVEEALTKVMKEKYREKENNLELLETNLK 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,311
Number of Sequences: 5004
Number of extensions: 58784
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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