Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P05
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0764 - 31804811-31804915,31805013-31805072,31805720-318059...    46   4e-05
07_03_0674 + 20598668-20598774,20599456-20600467                       30   1.7  
08_02_0822 + 21549257-21550729,21550776-21550877                       29   3.9  
08_02_0318 + 15710834-15711775                                         29   5.1  
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    28   6.8  
06_03_0515 + 21648685-21648707,21648790-21649291                       28   9.0  

>01_06_0764 -
           31804811-31804915,31805013-31805072,31805720-31805959,
           31807367-31807525,31807653-31807769
          Length = 226

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
 Frame = +2

Query: 185 EIRSDIEEINDLLKQAKRKKVQDLLSLEIRXXXXXXXXXXXXXXXXPMEV-SPIPTTSTS 361
           E+R D+EE+  L   AKR +V   L+ EIR                 +   SP    + +
Sbjct: 5   ELRLDLEELRRLEGLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAA 64

Query: 362 APVQKK----YQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 529
           AP          V L  + WDQ  + +K++V L+ V    +++V       S++    ++
Sbjct: 65  APAPAAAAGVSYVTLGSFSWDQDAEKIKIYVFLEGVE---QDKVETTFKPMSVDTKFHDV 121

Query: 530 ENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFE 691
           + K+Y   I KL + I         K  K+++ L K++    W  +   E KF+
Sbjct: 122 KGKNYRCAIPKLHKEIVPEKCKVLVKPTKIIVTLYKASKG-NWLDLHFKEDKFK 174


>07_03_0674 + 20598668-20598774,20599456-20600467
          Length = 372

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 323 PMEVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFV-ELKNVHTLPKEQVYCKLTD 499
           P +VSP P      P++K  + K ++Y       FVK  + ++ N H    E ++ +L+ 
Sbjct: 220 PPQVSPTPAIDVLLPIEKAQKAKRDIYA---VSYFVKAGLGKVLNPHKERMENLFKRLSP 276

Query: 500 KSMELHV 520
            + EL+V
Sbjct: 277 WAPELYV 283


>08_02_0822 + 21549257-21550729,21550776-21550877
          Length = 524

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/41 (24%), Positives = 28/41 (68%)
 Frame = +2

Query: 494 TDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDK 616
           ++K +E++ D  +NK+ ++++ ++ E +N+ +SH +  T +
Sbjct: 438 SEKMVEMN-DTRKNKEQIIMLKEVYEQLNMIESHMRPSTSQ 477


>08_02_0318 + 15710834-15711775
          Length = 313

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 356 YLLWVLVILPWASKFPFLLMLLVLSQVF*SPRRVNPVLSYV 234
           Y L  LV++P     P  ++ L LS V+ +PRR +PV +++
Sbjct: 228 YALAALVVVP----LPVQVVALALSSVWETPRRTSPVAAFL 264


>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 593 HWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQRNNRLK 715
           H   + +K + F A S    TW  +T+I  KFE  R  R++
Sbjct: 196 HTNVEPNKDIGFTA-SKQGETWERVTQIRDKFEYDRERRMR 235


>06_03_0515 + 21648685-21648707,21648790-21649291
          Length = 174

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = +2

Query: 515 HVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFED 694
           HV + +       +N   E + + D H K+K   V +F+  S+P+  +  + E E + E+
Sbjct: 67  HVQHYDVLKTFPEVNSDQELLVMFDLHNKKKV--VEMFIVYSDPSEPFKPINEWEFEEEE 124

Query: 695 QRNNRLKP 718
           Q +N ++P
Sbjct: 125 QPDNNIEP 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,421
Number of Sequences: 37544
Number of extensions: 313409
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)