Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P05
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)                   90   2e-18
SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)               30   1.7  
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       28   6.9  
SB_10788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)         28   9.1  

>SB_49918| Best HMM Match : SGS (HMM E-Value=1.5e-07)
          Length = 227

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
 Frame = +2

Query: 179 IQEIRSDIEEINDLLKQAKRKKVQDLLSLEI---RXXXXXXXXXXXXXXXXPMEVSPIPT 349
           ++E++ D +E+   + ++ R +V+++L  E+                    P   +    
Sbjct: 4   LEELKQDCDELRAFIAESSRARVKEVLQRELIKLEQEVSLLSREKPASTDQPNATAEEKP 63

Query: 350 TSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNL 529
           +S+       Y  K+  YGWDQSDKFVK+++ L  V T+PKE +     D+S+E+ V  L
Sbjct: 64  SSSKPVTVSSYTKKITSYGWDQSDKFVKIYITLPEVETVPKESLVPNFGDRSVEVTVKGL 123

Query: 530 ENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 685
           +  +Y L I +L   I  + S+ K K+  + +FL K      W  +   EKK
Sbjct: 124 KGVNYQLQICRLYSSIVPSTSYLKAKSGTLTVFLKKEKMGEKWEDVVYKEKK 175


>SB_44586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/95 (27%), Positives = 39/95 (41%)
 Frame = +2

Query: 401 YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLVINKLLEPIN 580
           Y W QS   V V   L     L  E + C +    +E+ + + E K   L+  KL   + 
Sbjct: 246 YTWSQSGDNVTVTFSLPTNTNL--EDIQCTIKPAHIEVKLSS-EKK---LLQGKLYAKVK 299

Query: 581 VADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 685
             DS W    + + I L K  P   WS + E + +
Sbjct: 300 PDDSTWTVVDNSLEIVLDKVVPEHHWSTVVESDDR 334


>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
          Length = 1002

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 122 KDLHSIQTNCSFIKMSEAKIQEIRSDIEEINDLLKQAKRKKVQDLLSLEI 271
           K+LH      S ++  E  IQ +R   EE+ ++L+Q  +++    LS+ +
Sbjct: 625 KNLHVYDMLVSLVEAEEKCIQRVRLSEEEVKEILQQRIKEEAAPQLSVSV 674


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 374 KKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENK 538
           K  Q+K  V+ W   D+ ++  +++  V  +  E+V C  T+    +HV  L+ +
Sbjct: 207 KTSQLKYVVFDWTWRDQKLRSLMDIPEVKAVKIERVLCLKTNLKHAVHVAVLQKE 261


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
 Frame = +2

Query: 401 YG-WDQSDKFVKVFVELKNVHTLPKEQVY-CKLTDKSMELHVDNLENKDYLLVINK---- 562
           YG WD   K V+ FVE +N   +   Q++ C  +D   + +++ L NK   + + K    
Sbjct: 8   YGNWDALPKKVQEFVE-ENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENC 66

Query: 563 ---LLEPINVA--DSH----WKQKTDKVVIFLAKSNPNTTWSHMTEIEKKFEDQR 700
                +P +VA  +S      K K D V  F  K      W  + E  KK  ++R
Sbjct: 67  YAVFTDPQDVARVESRTFICTKCKDDAVPHFKGKVGKLARWMSLEEAHKKLYEER 121


>SB_10788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 464 LPKEQVYCKLTDKSMELHVDNLENKDYLLVINKLLEPINVADSHWKQKTDKVVIFLAK 637
           LP+    C  T    +LH+D LE ++  L+      P+  A    ++KT     F AK
Sbjct: 5   LPEGMTNCAGTASPFDLHIDELEPEEITLLSKP--TPVVRASGITRKKTQNYAGFFAK 60


>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
          Length = 916

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 536 YFPDCPHAAPLIYLSIYNIPVPLVVYEHSL 447
           Y P  P+A+ L    +Y +PVP V Y  +L
Sbjct: 790 YIPYVPYASTLCQYPMYPMPVPYVPYASTL 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,259,568
Number of Sequences: 59808
Number of extensions: 410129
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)