Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P04
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772...    33   0.25 
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843...    31   1.0  
09_04_0569 + 18600750-18602117                                         29   4.1  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    29   5.4  
08_02_1400 + 26779193-26779245,26779622-26779766,26779950-267810...    29   5.4  
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708     29   5.4  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   7.1  

>02_05_0136 +
           26174965-26175849,26176965-26177030,26177124-26177258,
           26177369-26177434,26177516-26177701,26177777-26177863,
           26177985-26178098,26178174-26178298,26178375-26178483,
           26179298-26179423,26179511-26179831,26180146-26180269,
           26180405-26180529
          Length = 822

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 273 ALLLICIVSVTLAVVPLSSSSNEINQLYKRKLPSNGGALYPRATE 407
           AL+ + +++V L  +P+S S +   QL  RK  ++GGA    +T+
Sbjct: 297 ALIYVVLIAVVLQRLPISFSQHSAGQLRNRKNSNSGGAKVSESTD 341


>02_02_0270 +
           8431503-8431830,8431961-8432149,8434288-8434412,
           8434527-8434703,8434798-8434871,8434978-8435713
          Length = 542

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 649 VSPSATTAERGTSCRTTPSLHGPEERRLRPRHYMKKAQACVSQSLSFQDL 500
           V P+     +GT   T+   + P   RL+P  +M K++A  + ++S Q++
Sbjct: 259 VDPTGGVLTKGTHSLTSSPDNAPTSGRLKPMRFMSKSKAKAAPTISNQNM 308


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -3

Query: 655 PVVSPSATTAERGTSCRTT----PSLHGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTS 488
           P VSPSA+T+   +SC  T    P L G    +L  R    ++++ V+ + S       +
Sbjct: 179 PPVSPSASTSTSSSSCSATSSPPPQLQGHGRSQL--RRIFARSESSVAATTSTSSPGQYT 236

Query: 487 HFYSRILGRQAMAENSISHL 428
           H  +  L R      +  HL
Sbjct: 237 HNLAWFLKRSDGGGGAADHL 256


>09_02_0286 -
           6898041-6898144,6898881-6899005,6899158-6899207,
           6899245-6899386,6899951-6900020,6900077-6900216,
           6900291-6900365,6901083-6904723
          Length = 1448

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 RKVLLNMIKPRFAFALLLICIVSVTLAVVPLSSSSNEINQLYKRKLPSNG 380
           RKV+   I    A ++L++ ++ VTL  + ++  + E+   Y   LP++G
Sbjct: 824 RKVIGASILVGVALSVLILLLLLVTLCKLRMNQKTEEVRTGYVESLPTSG 873


>08_02_1400 +
           26779193-26779245,26779622-26779766,26779950-26781059,
           26781153-26781404,26782150-26782230,26782623-26782770,
           26782858-26783264,26783557-26783613
          Length = 750

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 593 PTWSRREASSPTSLYEEGTGMCITEPVFSRSCAYQPFL*PNSGSAGDGRKLHIPS 429
           PT S R  SSP S   EG G C  + +   S + + F  P+ G +     L IP+
Sbjct: 74  PTPSSRPVSSPRSF--EGVGACDLDGLLGGSSSSRVFEYPSIGDSDRKTALDIPN 126


>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
          Length = 488

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 510 FKILRIPAISIAEFWVGRRWPKTPY 436
           +++   P  +  E W  +RWP++PY
Sbjct: 346 YQVFCQPLFAFVEKWAAQRWPESPY 370


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 601 WYDRRFHVPPWWQTAKQRVWLRFSSVHYAAEVFVNG 708
           W+   F   P      Q V L F  ++Y+AEV++NG
Sbjct: 100 WFFTTFQCAP---AGHQHVSLNFRGINYSAEVYLNG 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,194,033
Number of Sequences: 37544
Number of extensions: 425311
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)