Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_P04
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24) 118 7e-27
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 31 0.77
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0) 29 4.1
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 29 4.1
SB_3345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_50593| Best HMM Match : KIX (HMM E-Value=8) 28 7.2
SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7) 28 9.5
SB_20594| Best HMM Match : rve (HMM E-Value=2.6e-11) 28 9.5
SB_58366| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=0.014) 28 9.5
>SB_23296| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=4.2e-24)
Length = 201
Score = 118 bits (283), Expect = 7e-27
Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Frame = +1
Query: 418 LRTLDGIWSFR-PSPADPEFGYRNGWYAQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVG 594
++ L G+W+FR + D E G+ W+++ LEK+G VI MPVP+SYND+ +D +RD G
Sbjct: 76 IKDLSGLWNFRVDNSKDKEAGFAESWFSRPLEKSGEVIPMPVPASYNDITQDKGIRDFRG 135
Query: 595 LVWYDRRFHVPPWWQTAKQRVWLRFSSVHYAAEVFVNGKSVTYHEIGHLPFEVXITD 765
WYD + +VP W + RV LRF +Y +V++NG+ VT HE G+L FE I++
Sbjct: 136 WAWYDMQTYVPSRWNDSNTRVVLRFEGANYYTKVWLNGEKVTEHEGGYLAFEADISE 192
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 34.7 bits (76), Expect = 0.083
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -3
Query: 598 PSLHGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTSHFYSRILGRQAMAENSI-SHLGF 422
P HGP RR RPRH + A ++S+S DL Y++ R+++ NS+ +L
Sbjct: 84 PRFHGPSTRRWRPRHRLTIANYPYTRSVSCVDLP----IYAKWSRRRSITSNSLYEYLFC 139
Query: 421 LSXLVSVA 398
L V VA
Sbjct: 140 LVSAVVVA 147
>SB_37881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 418 LRTLDGIWSFR-PSPADPEFGYRNGWYAQDLEK 513
L+ L+G+W+FR S + G++ WY++ LEK
Sbjct: 40 LKDLNGLWNFRVDSSKTRDAGFQEKWYSKPLEK 72
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 496 AQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVGLVWYDRRFHVPPWWQTA 645
A D EKT +V +PVPS+ +D LR +G Y RRF VP + Q A
Sbjct: 883 ATDPEKTKAVSALPVPSTVHD------LRSFLGFASYYRRF-VPKFAQVA 925
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -3
Query: 640 SATTAERGTSCRTTPSLHGPEERRLRPRHYMKKAQACVSQSLSFQDLAHTSHFYSRILGR 461
S T + G C TP + G R RP ++K + + LS + L HTS +G
Sbjct: 503 SPTFRKAGGVCTWTPGVVGQLHREKRPVRSLRKMASEDNTCLSSRMLCHTSRIQCYKVGS 562
Query: 460 QAMAENS-ISHLG 425
S ++H+G
Sbjct: 563 SVTHVGSGVTHVG 575
>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
Length = 1311
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 321 LSSSSNEINQLYKRKLPSNGGALYPRATETRXLKNP 428
L+S +EI +LY + + GGA YP A R LK P
Sbjct: 1140 LTSVDDEIARLYLNQ--ALGGACYPNAIRKRDLKEP 1173
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 520 SVIHMPVPSSYN-DVGEDASLRDHVGLVWYDRRFHVPPWWQTAKQRVWLRFSSVHYAAEV 696
S I VP S + ++G +ASL++ + F +PP ++T R L HYA E+
Sbjct: 11 STIESSVPPSPSLNLGSEASLKEQAEI-----SFKLPPTYETLVSRAQLAAEFHHYALEI 65
>SB_3345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 89 QDLVGNCFILFCALNFFLVFGIVKKTNKYRG*LDSNSKIEIQLILTSEESFIKHD 253
Q + C I NF+L K KYR +D N + + I S+E ++H+
Sbjct: 40 QGVKQGCMISPTLFNFYLSDLPEKLNEKYRNDIDLNEYLRLASIRVSDEKDLEHE 94
>SB_50593| Best HMM Match : KIX (HMM E-Value=8)
Length = 139
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 107 CFILFCALNFFLVFGIVKKTNKYRG*LDSNSKIEIQLILTSEESFIKHD 253
C I NF+L K KYR +D N + + I S+E ++H+
Sbjct: 80 CMISPTLFNFYLSDLPEKLNEKYRNDIDLNEYLRLASIRVSDEKDLEHE 128
>SB_41936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 655 PVVSPSATTAERGTS--CRTTPSL--HGPEERRLRPRHYMKKAQA-CVSQSLS 512
P+ P + GT C TT L HG E RR P H+ +A A C + L+
Sbjct: 723 PLTWPKVLMVDDGTEFKCATTKLLTDHGVEVRRAEPGHHRSQAFAECFHRRLA 775
>SB_24333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 620 WNLLSYHTKPTWSRREASSPTSLYEE----GTGMCITEPVFSRS 501
W+L Y WS + ++ SLY+ TG C+ EP++ RS
Sbjct: 192 WSL--YDRATLWSLYDRTTLWSLYDRTTLWSTGRCMVEPLYGRS 233
>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
Length = 483
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 114 IKQFPTRSWRAYRNNIRYVIFEFEIGIRVLRPTRVG 7
+ P + WR + N++ VI + E I V RP +G
Sbjct: 425 VTAIPYKVWRNWVNDVSDVIIKMEGEISVARPNAIG 460
>SB_20594| Best HMM Match : rve (HMM E-Value=2.6e-11)
Length = 207
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 655 PVVSPSATTAERGTSCR--TTPSL--HGPEERRLRPRHYMKKAQA 533
P+ P + GT C+ TT L HG E RR P H+ +A A
Sbjct: 103 PLTWPKVLMVDDGTECKGATTKLLTDHGVEVRRAGPGHHRSQAIA 147
>SB_58366| Best HMM Match : Glyco_hydro_2_N (HMM E-Value=0.014)
Length = 50
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 697 FVNGKSVTYHEIGHLPFEVXITD 765
++NG+ VT HE G+L FE I++
Sbjct: 1 WLNGEKVTEHEGGYLAFEADISE 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,257,272
Number of Sequences: 59808
Number of extensions: 480001
Number of successful extensions: 1466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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