Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P04
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 493 YAQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVGLVWYDRRFHVPPW 633
           Y   + +TG V +    +S+ D  EDA LR  +  +       VP W
Sbjct: 535 YVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSVPDW 581


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 495 IPAISIAEFWVGRRWP 448
           +P +  A+F  G RWP
Sbjct: 79  LPPVQDADFCCGMRWP 94


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 639 DGETTGLAEIQQRSLCRRSVCKRQISDISRDRSL 740
           +G TT L E   + L  R  C R I   +R+R +
Sbjct: 454 EGSTTYLWEFLLKLLQDREYCPRYIKWTNRERGV 487


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 450 PKTPYPI*GS*VPWFL*HVGTMHLRCLVIFF 358
           P+ P P  GS   W +     ++L+C ++ F
Sbjct: 59  PRYPLPYSGSKCTWTITSYHRINLKCSLVEF 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,235
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)