Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_P03
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.86 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.0  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   4.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   8.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.0  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    25   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 355  ISTRPLTTNPRFRPATEFLLAGTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVH 534
            I + P +  P+  P +  L        A P   VPP      + PP+ +  A+ PP+ V 
Sbjct: 978  ILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037

Query: 535  QEEDP 549
                P
Sbjct: 1038 STAPP 1042


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 472  HQVEDPPMEVQQAEDPPMEVHQEEDPPMEV 561
            H V  PP+  Q A  P M       PPM V
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 198 LRC*GILYLCTYARILSIHRRSILWRKEEQQSSNPYLS 85
           + C  + +   YA+ L IHR S L+    + + N Y S
Sbjct: 175 IHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCS 212


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -1

Query: 234 DQTCTDLRQARRLRC*GILYLCTYARILSIHRRSILWRK 118
           D + T LR+    +   +++ CTYA +++ + + ++WR+
Sbjct: 46  DSSLTHLRKKSYTK---VVHDCTYALVINPYDKKVIWRR 81


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
 Frame = +1

Query: 331 QNRKH-QLLISTRPLTTNPRFRPATEFLLAGTHHMTARPHMEVPPTEVHQVEDPPMEVQQ 507
           Q+ +H Q +   +P+ +   ++P++  +    + + A P   V  T+ +Q   P   VQ 
Sbjct: 382 QSTQHFQPVQPIQPVQSTQYYQPSSP-VQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQN 440

Query: 508 AEDPPMEVHQEEDPPMEVTIHMEAINIQVDRQEDITPTAAITITGEVRRMAE 663
            +       Q   P +E         +   RQ DITPTA+ T        AE
Sbjct: 441 VKPA-----QPAQPSLEDAAKRRVEEML--RQMDITPTASSTTANNAYASAE 485


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 421 THHMTARPHMEVPPTEVHQVEDPPMEVQQAEDP 519
           TH+   R H E+        E+ P EV+Q E P
Sbjct: 318 THYRLIRQHPELEHVWEKLEEEAPREVKQIEQP 350


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 188 KASYISARTPVF*VSIGVVYY 126
           +A Y   R P F  SIGV+YY
Sbjct: 609 QAVYRDGRNPTFWCSIGVLYY 629


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/95 (20%), Positives = 40/95 (42%)
 Frame = +1

Query: 223 ARLVTQATAAHILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLISTRPLTTNPRFRPAT 402
           AR+  + T  +  H RR    +   Q +  N ++W   R  + + + + +       PA+
Sbjct: 23  ARVNRETTKLNKAHVRRDYSGRSICQPDTNNPTRWKYERPLETIRAWQDVAEGK--VPAS 80

Query: 403 EFLLAGTHHMTARPHMEVPPTEVHQVEDPPMEVQQ 507
               A   ++   P ++    EV+    PP++ Q+
Sbjct: 81  NEKAARVSNLKTVPSLKRENKEVNANSKPPVKQQE 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,281
Number of Sequences: 5004
Number of extensions: 53480
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)