Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_P02
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 457 e-129
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 450 e-127
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 449 e-126
SB_56| Best HMM Match : Actin (HMM E-Value=0) 448 e-126
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 357 7e-99
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 235 2e-62
SB_54| Best HMM Match : Actin (HMM E-Value=0) 203 1e-52
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 195 3e-50
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 185 4e-47
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 5e-43
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 3e-23
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 71 9e-13
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 64 1e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 3e-09
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 58 5e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 3e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.003
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.2
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 31 1.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 1.6
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 2.2
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 30 2.2
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 2.9
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 3.8
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 5.0
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 6.6
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 8.8
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 8.8
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 8.8
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 8.8
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 457 bits (1126), Expect = e-129
Identities = 213/217 (98%), Positives = 216/217 (99%)
Frame = +3
Query: 69 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 248
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 428
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 429 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 608
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLD
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 609 LAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
LAGRDLTDYLMKILTERGYSFTTT EREIVRDIKEKL
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 217
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 450 bits (1108), Expect = e-127
Identities = 210/215 (97%), Positives = 214/215 (99%)
Frame = +3
Query: 75 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 254
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 255 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 434
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 435 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 615 GRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
GRDLTDYLMKILTERGYSFTTT EREIVRDIKEKL
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 216
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 449 bits (1106), Expect = e-126
Identities = 209/217 (96%), Positives = 215/217 (99%)
Frame = +3
Query: 69 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 248
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 428
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 429 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 608
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLD
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLD 180
Query: 609 LAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
LAGRDLTDYLMKILTERGYSFTTT EREIVRDIKEKL
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 217
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 448 bits (1104), Expect = e-126
Identities = 209/215 (97%), Positives = 214/215 (99%)
Frame = +3
Query: 75 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 254
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 255 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 434
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 435 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 615 GRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
GRDLTDYLMKILTERGYSFTTT EREIVRDIKEKL
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 216
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 357 bits (877), Expect = 7e-99
Identities = 165/173 (95%), Positives = 170/173 (98%), Gaps = 2/173 (1%)
Frame = +3
Query: 69 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 248
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 249 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 428
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 429 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE--GYA 581
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE GY+
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 235 bits (576), Expect = 2e-62
Identities = 109/214 (50%), Positives = 150/214 (70%), Gaps = 3/214 (1%)
Frame = +3
Query: 87 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 260
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 261 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 437
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 438 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 617
MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AG
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 618 RDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
RD+T YL+K++ RGY+F T + E VR +KEKL
Sbjct: 187 RDITKYLIKLMLLRGYAFNHTADFETVRMMKEKL 220
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 203 bits (495), Expect = 1e-52
Identities = 91/133 (68%), Positives = 112/133 (84%)
Frame = +3
Query: 321 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 500
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 501 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 680
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 681 XEREIVRDIKEKL 719
E++I+RD+KE L
Sbjct: 2249 AEQQIIRDLKETL 2261
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 36 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 195 bits (475), Expect = 3e-50
Identities = 93/102 (91%), Positives = 98/102 (96%)
Frame = +3
Query: 414 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 593
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 594 ILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
I+RLDLAGRDLTDYLMKILTERGYSFTTT EREIVRDIKEKL
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL 179
Score = 186 bits (452), Expect = 2e-47
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +3
Query: 75 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 254
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 255 RGILTLKYPIEHGIITNWDDMEKIWHHTF 341
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 185 bits (450), Expect = 4e-47
Identities = 87/95 (91%), Positives = 91/95 (95%)
Frame = +3
Query: 435 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 614
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 615 GRDLTDYLMKILTERGYSFTTTXEREIVRDIKEKL 719
GRDLTDYLMK++TERGYSFTTT EREIVRDIKEKL
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKL 95
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (416), Expect = 5e-43
Identities = 74/116 (63%), Positives = 100/116 (86%)
Frame = +3
Query: 369 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 548
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 549 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTXEREIVRDIKEK 716
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F ++ E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 3e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +3
Query: 279 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 458
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 459 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 638
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 639 MKILTE 656
++ E
Sbjct: 123 RQMFEE 128
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 70.9 bits (166), Expect = 9e-13
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 480 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 656
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 657 RGYSFTTTXEREIVRDIKEKL 719
RG++FT++ +IV DIKEK+
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKI 847
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +3
Query: 30 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 209
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Query: 210 --MGQKD-SYVGDEAQSKRGILTL 272
+ KD GD A +K G++ L
Sbjct: 742 DNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 64.1 bits (149), Expect = 1e-10
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Frame = +3
Query: 474 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 629
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 630 DYLMKILTERGYSFTTTXEREIVRDIKEK 716
++ ++L ER E + IKE+
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKER 128
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 58.4 bits (135), Expect = 5e-09
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Frame = +3
Query: 84 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 263
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 264 LTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 437
L Y P + G + NWD ++IW +TF E + M +I
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEI 324
Query: 438 MFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 599
+FE +N A+ A LS Y S +V+D+G +H VP++ G + A+
Sbjct: 325 LFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVR 384
Query: 600 R 602
R
Sbjct: 385 R 385
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +3
Query: 207 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 386
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 516 TGIVLDSGDGVSHTVPI 566
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -3
Query: 191 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 75
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 324 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 503
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 504 SGRTTGIV 527
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 100 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 246
S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 64 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 168
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.94
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 270 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 422
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 411 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 527
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 692 FPLXGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 525
F + G + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 524 DTGGTTGGVQ 495
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 656 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 513
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 64 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 168
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 431 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 252
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 251 AL 246
++
Sbjct: 214 SV 215
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -1
Query: 616 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 437
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 436 IWVIFSLLALGLR 398
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 4 SQISLP*SQYQRPQHKHTQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 168
+Q LP + P T S C +L+R T+ APA P SPAT P R
Sbjct: 393 AQRPLPADRRSEPLSAKTIVSSCLAPLLVRPLETIPAPAPTTPTSPATPASGPPIR 448
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 168
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 3.8
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -1
Query: 556 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 404
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 403 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 239
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 599 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 501
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 414 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 563
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 399 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 527
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 49 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 174
K T ++ ATT + +T PA P +P TT P ++ P+
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 64 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 168
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 196 PWWRGRPTMDGKTARGASSPAKPALHMPEP 107
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 64 SRCATTMLLR-L*STMAPACARPVSPAT 144
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 565 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 389
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 388 VSSTGCSSGATRSSL*KVW 332
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 64 SRCATTMLLR-L*STMAPACARPVSPAT 144
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 64 SRCATTMLLR-L*STMAPACARPVSPAT 144
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,162,784
Number of Sequences: 59808
Number of extensions: 487718
Number of successful extensions: 1783
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -