Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O23
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 143 2e-35
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.083
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.15
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 29 0.44
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 29 0.59
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.77
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 1.4
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.8
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 1.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.1
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 5.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 5.5
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 7.2
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 7.2
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 25 9.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 9.5
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 143 bits (346), Expect = 2e-35
Identities = 68/166 (40%), Positives = 104/166 (62%)
Frame = +3
Query: 156 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 335
M +F F D+++ D+ ++R + + + G+K+K +Y ETV G V + L K G K
Sbjct: 1 MDYF-FKSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRL-KDGRK 58
Query: 336 LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYT 515
L+H G+K+E IGQIE YD+GN HEF V+ELA PG++ + FEF +V+KPYE Y
Sbjct: 59 LDHDGVKIEFIGQIENTYDKGNIHEFTRSVQELASPGEMRHAQMFEFEFKHVDKPYESYI 118
Query: 516 GSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
G NV+LRY R T+ R++ D+ +E D+ V+ P+ + I+M+V
Sbjct: 119 GKNVKLRYICRVTVSRKMKDVIREKDLWVYRFENEPETNSLIRMDV 164
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.083
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -2
Query: 370 PMSSTLMP*CSSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTIS 191
P+S++ + S+F N T P T S S ++N S +P+S FTS+ F ++ T S
Sbjct: 639 PLSNSTVAPTSTFTSSGFNTTSGLP-TSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSS 697
Query: 190 IS 185
S
Sbjct: 698 AS 699
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -2
Query: 364 SSTLMP*CSSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISIS 185
+S+++P + GF N T P T S S +N + P+S FTS+ F ++ T S+S
Sbjct: 673 NSSIVPTSTFTSSGF-NTTSGLP-TSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVS 730
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = -2
Query: 382 NSI*PMSSTLMP*CSSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASS 203
NS+ P SS P SS G +++ ET SP+ ++ S+ SSV +S+T+ + SS
Sbjct: 639 NSVGPSSSQTTPTSSSSITGSQSLK----ETSSPAYVSSTVSYTSSSVDSSSTYNSTGSS 694
Query: 202 KTISIS 185
+ S S
Sbjct: 695 SSDSQS 700
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 244 SVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTXRFFTWF---CFGIVTIKLSKT 74
++++S L++S+ T+S S + +K + + N+S F W FG++ + LS
Sbjct: 532 TIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGV-LSSW 590
Query: 73 LK 68
LK
Sbjct: 591 LK 592
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = -3
Query: 291 PFHRHNTTITF-----LFYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSFSQY 145
PFH N F L Y P L PP + LFR PSDR+ Q+
Sbjct: 259 PFHGSNPNNIFKKIMSLEYELP-KLLPPDIVPLFSHLFRIQPSDRSTTQQIKQF 311
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 316 NVTFTFPETVSPS*YNNNFSFLPSSVFTS-ATFRLSASSKTISISA 182
+ T T TVS S + +N S +P+SV +S ++F S+SS T +++A
Sbjct: 280 STTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTA 325
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -2
Query: 292 TVSPS*YNNNFSFLPSSVFTSATFRLSASS 203
T + S Y N SFLPSSV +SA+ LS+SS
Sbjct: 216 TTTGSPYYNTSSFLPSSVISSAS--LSSSS 243
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 252 KKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLV 425
K K+ +YY+ +G + L K S + I V + QI+ YD G ++ F SLV
Sbjct: 296 KNRKVYMYYE----NGSQLLALDKDAS---NDAILVTSMSQIDNIYDNGFYNNFFSLV 346
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -2
Query: 295 ETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTXRFFT 116
E VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+
Sbjct: 154 EIVSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMN 209
Query: 115 WFCF 104
FC+
Sbjct: 210 EFCY 213
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 319 RNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSAS 206
RN T VS Y+NN LP ++ TS+TFR SAS
Sbjct: 503 RNATQPTQPPVSQVDYSNN---LPPNLDTSSTFRSSAS 537
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -2
Query: 295 ETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTXRFFT 116
E VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+
Sbjct: 154 EIVSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMN 209
Query: 115 WFCF 104
FC+
Sbjct: 210 EFCY 213
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 65 FFQCFTQFYRYYSKTKPRKKSXGRIIIYCENELFRVRSDGGYRNS 199
F Q ++ +YY+ + RK+S R ++ + RSDG Y S
Sbjct: 319 FSQSVARYRQYYNSNRDRKRSSSR----SDDREYHRRSDGRYDRS 359
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +1
Query: 454 FNTRRILSSLLMSKNHTKYIQALMSGCGIS-CGRQSSGASLTS------PRRWILPCTRS 612
+++ R+LS +L+ + ++K + S + G S + S P W+LPC R
Sbjct: 237 YHSNRLLSRILLVERNSKGQSVMHSVAKLGWAGLCSKFCEIVSSIPDSEPLNWMLPCWRD 296
Query: 613 VXIRTSLILS 642
V T L L+
Sbjct: 297 VMHDTPLTLA 306
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -3
Query: 324 VSATSHSLSRRPFHRHNTTITFLFYHR---PFSLQPPSVCQHHQKLFRYPP 181
+SA S+S+ +P H HN Y R F + P +V + + R+ P
Sbjct: 175 LSAPSNSVQVKPKHEHNVDYNSSMYRRRTFRFWVHPDNVMEVKTYIMRHLP 225
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 207 DADKRKVAEVKTDDGKKEKLLLYYDGETV 293
+AD E+ + + KK LYYD TV
Sbjct: 157 EADTNNATEMVSSNAKKSVYPLYYDSATV 185
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 247 SSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTXRFFTWFC 107
+SVF TF L T+ + V P + L F + +YS FT FC
Sbjct: 100 ASVFY-VTFILFEMPTTLLMKKVQPK-RMLAFIVISYSLTTIFTGFC 144
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 240 TDDGKKEKLLLYYDGETVSGKVNVTLRKPGS 332
+DD KK KL +DG N+++R PGS
Sbjct: 427 SDDNKKSKLNAEFDGHV----NNISVRPPGS 453
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 198 LFRYPPSDRTRKSSFSQYIIIRPXDFLRGFVLE 100
LF+Y P RT ++ Q +I+ G +LE
Sbjct: 108 LFKYVPDKRTLLENYDQLVIVVDETIDDGVILE 140
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 337 SFDPGFRNVTFT--FPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV 179
+F F VT T FPE P NN+ S + + T T RL +K +A+
Sbjct: 458 AFPVSFLLVTLTDGFPEKPDPLFSNNDTSIITTLESTDETGRLRQLAKLFDHNAI 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,096
Number of Sequences: 5004
Number of extensions: 59973
Number of successful extensions: 196
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -