Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O23
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 146 1e-35
11_06_0454 + 23786984-23786986,23787062-23787136,23787242-237873... 145 3e-35
03_05_0682 - 26691973-26692623,26692681-26692788,26694741-266948... 112 3e-25
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296... 31 0.61
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 29 3.2
09_04_0397 + 17273013-17273570 28 5.6
07_03_1450 + 26620178-26620456,26622122-26622775 28 5.6
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 28 7.5
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 28 7.5
06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532 27 9.9
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 27 9.9
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 146 bits (355), Expect = 1e-35
Identities = 74/164 (45%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Frame = +3
Query: 171 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQG 350
F DI I F DA RK VK D+G+ + ++ ET+SG+V+V + PG ++EH G
Sbjct: 8 FKPPCDISIAFSDARSRKQIAVKNDNGRTVMVPVFQSLETISGEVSV-VPVPGKRIEHLG 66
Query: 351 IKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYTGSNVR 530
+K+EL+GQIEL+ +RG ++F SLV+EL PG++ + +YPFEF+ VE PYE Y G+NVR
Sbjct: 67 VKIELLGQIELYLERGKFYDFTSLVRELDIPGEIYEKKTYPFEFSTVEMPYESYNGTNVR 126
Query: 531 LRYFLRATIVRRLT---DITKEVDIAVHTLCXYPDVLNSIKMEV 653
LRY L+ TI R + I + + V P + NSIKMEV
Sbjct: 127 LRYILKVTISRNIMGMGSIVEFREFCVRNYSPAPTINNSIKMEV 170
>11_06_0454 +
23786984-23786986,23787062-23787136,23787242-23787316,
23787534-23787606,23787965-23788009,23788398-23788509,
23788640-23788706,23789010-23789054,23790138-23790193,
23790280-23790455,23790584-23790710,23791384-23791426
Length = 298
Score = 145 bits (351), Expect = 3e-35
Identities = 72/162 (44%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Frame = +3
Query: 171 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQG 350
F D+ I F D RK +K D+GK + + ET++G+V+V PG ++EHQG
Sbjct: 8 FKAPCDVFITFADERSRKQVAIKKDNGKTLMVPAFQSLETIAGEVSVA-PVPGKRVEHQG 66
Query: 351 IKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYTGSNVR 530
+K+EL+GQIEL+++RG+ ++F SLV+EL G++ + +YPFEF+ VE PYE Y G+NVR
Sbjct: 67 VKIELLGQIELYHERGHFYDFTSLVRELEVAGEIYERKTYPFEFSTVEMPYESYNGTNVR 126
Query: 531 LRYFLRATIVR-RLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
LRY L+ TI R T + + D V P + NSIKMEV
Sbjct: 127 LRYILKVTIGRPYATSVVECRDFCVRNYTPLPSINNSIKMEV 168
>03_05_0682 -
26691973-26692623,26692681-26692788,26694741-26694807,
26695311-26695422,26695743-26695787,26696163-26696235,
26696321-26696362
Length = 365
Score = 112 bits (269), Expect = 3e-25
Identities = 50/108 (46%), Positives = 77/108 (71%)
Frame = +3
Query: 264 LLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARP 443
+L + ET++G+V++ PG ++EHQG+K+EL+GQIEL+++RG+ ++F SLV+EL
Sbjct: 2 VLAFQSLETIAGEVSIA-PIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLVRELDVA 60
Query: 444 GDLLQHTSYPFEFANVEKPYEVYTGSNVRLRYFLRATIVRRLTDITKE 587
G++ + +YPFEF+ VE PY+ Y G+NVRLRY L+ I R I E
Sbjct: 61 GEIYERKTYPFEFSTVEMPYDSYNGTNVRLRYILKVRIGRPYATIVVE 108
>04_01_0234 +
2963364-2963520,2963931-2964053,2964134-2964205,
2964709-2964979,2965301-2965380,2966075-2967292,
2968137-2968315
Length = 699
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 174 GQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGI 353
G+TA+I + D+ D+ + ++ G + +YD E + R P L H +
Sbjct: 96 GETAEIYDIADNVDELDMQFRQSSQGPRNMQFYFYDTEDADALAHRVRRSPDVDLNHVRV 155
Query: 354 KVELIGQ 374
+ ++ Q
Sbjct: 156 NLRILEQ 162
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 105 KQNHVKNLLVE*LYIVKMSFFG----FGQTADIEIVFDDADKRKVAE 233
KQ+H LL LYIV F G FG+ ++EI D + A+
Sbjct: 237 KQHHAAELLPTPLYIVYTQFLGQKEAFGENIEVEITGSTKDAQMFAQ 283
>09_04_0397 + 17273013-17273570
Length = 185
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -1
Query: 653 YFHFDRIKDVRIXTERVHGNIHLLGDVSEAPDDCR 549
+F FD+ D RI E V +H LGD S + +DCR
Sbjct: 122 FFVFDQDGDGRISAEEVMQVLHKLGD-SCSLEDCR 155
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 303 LSRRPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKLFRYPPS 178
+ +P+H H+ + PFSL PP HH L + P+
Sbjct: 134 MPHQPYHHHH-------HLNPFSLPPPPPAYHHHHLIQEEPA 168
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 300 KVNVTLRKPGSKLEHQGIKVELIGQ 374
+V ++LRKP K +H G V+LI +
Sbjct: 609 QVQISLRKPNRKCKHSGQTVKLINE 633
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/80 (20%), Positives = 37/80 (46%)
Frame = +3
Query: 186 DIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVEL 365
++E+V +D+R V + G ++ +DGET S ++ + + ++V L
Sbjct: 256 NLELVNKKSDRRYVIKEMLGQGTFGQVAKCWDGETNSYVAVKVIKNQPAFYQQAIMEVSL 315
Query: 366 IGQIELFYDRGNHHEFISLV 425
+ + YD + H + ++
Sbjct: 316 LSMLNEKYDPDDQHHIVRML 335
>06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532
Length = 101
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -3
Query: 306 SLSRRPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSFSQYIIIR 133
+L+ +PF H+ + F H L +C+HH + D+ K S Y I+
Sbjct: 44 TLTGQPFEGHSKIVGFATRHSKIVLLADGLCEHHYIISTQVKKDKD-KCPVSNYYEIQ 100
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 255 KEKLLLYYDGETVSGKVNVTLRKPGSKLE 341
K+KL + Y GE +GK T R G K +
Sbjct: 126 KQKLKMIYLGEAFNGKATKTARSHGKKFQ 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,805,039
Number of Sequences: 37544
Number of extensions: 377234
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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