Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O23
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 255 9e-68
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 254 2e-67
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 254 2e-67
BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sortin... 232 9e-61
AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sortin... 232 9e-61
AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sortin... 232 9e-61
AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protei... 232 9e-61
AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens ... 230 3e-60
D87343-1|BAA23225.1| 297|Homo sapiens DCRA protein. 45 3e-04
BC110655-1|AAI10656.1| 297|Homo sapiens Down syndrome critical ... 45 3e-04
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 255 bits (625), Expect = 9e-68
Identities = 114/166 (68%), Positives = 140/166 (84%)
Frame = +3
Query: 156 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 335
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ LR P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALRNPNKR 60
Query: 336 LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYT 515
LEHQGIK+E IGQIEL+YDRGNHHEF+SLVK+LARPG++ Q ++ FEF +VEKPYE YT
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120
Query: 516 GSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
G NV+LRYFLRATI RRL D+ KE+DI VHTL YP++ +SIKMEV
Sbjct: 121 GQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEV 166
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 254 bits (622), Expect = 2e-67
Identities = 113/166 (68%), Positives = 140/166 (84%)
Frame = +3
Query: 156 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 335
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ L+ P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60
Query: 336 LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYT 515
LEHQGIK+E IGQIEL+YDRGNHHEF+SLVK+LARPG++ Q ++ FEF +VEKPYE YT
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120
Query: 516 GSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
G NV+LRYFLRATI RRL D+ KE+DI VHTL YP++ +SIKMEV
Sbjct: 121 GQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEV 166
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 254 bits (622), Expect = 2e-67
Identities = 113/166 (68%), Positives = 140/166 (84%)
Frame = +3
Query: 156 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 335
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ L+ P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60
Query: 336 LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYT 515
LEHQGIK+E IGQIEL+YDRGNHHEF+SLVK+LARPG++ Q ++ FEF +VEKPYE YT
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYT 120
Query: 516 GSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
G NV+LRYFLRATI RRL D+ KE+DI VHTL YP++ +SIKMEV
Sbjct: 121 GQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSSIKMEV 166
>BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 232 bits (567), Expect = 9e-61
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 329
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 330 SKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEV 509
+LEHQGI++E +GQIELF D+ N HEF++LVKELA PG+L Q SY FEF VEKPYE
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120
Query: 510 YTGSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
Y G+NVRLRYFL+ TIVRRLTD+ KE D+ VH L YPDV NSIKMEV
Sbjct: 121 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEV 168
>AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 232 bits (567), Expect = 9e-61
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 329
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 330 SKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEV 509
+LEHQGI++E +GQIELF D+ N HEF++LVKELA PG+L Q SY FEF VEKPYE
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120
Query: 510 YTGSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
Y G+NVRLRYFL+ TIVRRLTD+ KE D+ VH L YPDV NSIKMEV
Sbjct: 121 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEV 168
>AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 232 bits (567), Expect = 9e-61
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 329
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 330 SKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEV 509
+LEHQGI++E +GQIELF D+ N HEF++LVKELA PG+L Q SY FEF VEKPYE
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120
Query: 510 YTGSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
Y G+NVRLRYFL+ TIVRRLTD+ KE D+ VH L YPDV NSIKMEV
Sbjct: 121 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEV 168
>AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protein
26 protein.
Length = 327
Score = 232 bits (567), Expect = 9e-61
Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 329
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 330 SKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEV 509
+LEHQGI++E +GQIELF D+ N HEF++LVKELA PG+L Q SY FEF VEKPYE
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120
Query: 510 YTGSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
Y G+NVRLRYFL+ TIVRRLTD+ KE D+ VH L YPDV NSIKMEV
Sbjct: 121 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEV 168
>AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens
cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
H58 PROTEIN. ).
Length = 327
Score = 230 bits (563), Expect = 3e-60
Identities = 107/168 (63%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
Frame = +3
Query: 156 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 329
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 330 SKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEV 509
+LEHQGI++E +G+IELF D+ N HEF++LVKELA PG+L Q SY FEF VEKPYE
Sbjct: 61 KRLEHQGIRIEFVGRIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 120
Query: 510 YTGSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCXYPDVLNSIKMEV 653
Y G+NVRLRYFL+ TIVRRLTD+ KE D+ VH L YPDV NSIKMEV
Sbjct: 121 YIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEV 168
>D87343-1|BAA23225.1| 297|Homo sapiens DCRA protein.
Length = 297
Score = 44.8 bits (101), Expect = 3e-04
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Frame = +3
Query: 270 LYYDGETVSGKVNVTLRKPGSKLEHQGIKVEL------------IGQIELFYDRGNHHEF 413
+Y+ GE +SG V ++ + ++HQG+ + + +G E FY+ +
Sbjct: 15 VYHAGEVLSGVVVISSK---DSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQI 71
Query: 414 ISLVKELARPGDLLQ-HTSYPFEFANVEKP----YEVYTGSNVRLRYFLRATIVRRL--T 572
I+ E+ +PG T PFEF K YE Y G V ++Y LR + R L
Sbjct: 72 INSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVLYETYHGVFVNIQYTLRCDMKRSLLAK 131
Query: 573 DITKEVDIAVHT 608
D+TK + VH+
Sbjct: 132 DLTKTCEFIVHS 143
>BC110655-1|AAI10656.1| 297|Homo sapiens Down syndrome critical
region gene 3 protein.
Length = 297
Score = 44.8 bits (101), Expect = 3e-04
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Frame = +3
Query: 270 LYYDGETVSGKVNVTLRKPGSKLEHQGIKVEL------------IGQIELFYDRGNHHEF 413
+Y+ GE +SG V ++ + ++HQG+ + + +G E FY+ +
Sbjct: 15 VYHAGEVLSGVVVISSK---DSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQI 71
Query: 414 ISLVKELARPGDLLQ-HTSYPFEFANVEKP----YEVYTGSNVRLRYFLRATIVRRL--T 572
I+ E+ +PG T PFEF K YE Y G V ++Y LR + R L
Sbjct: 72 INSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVLYETYHGVFVNIQYTLRCDMKRSLLAK 131
Query: 573 DITKEVDIAVHT 608
D+TK + VH+
Sbjct: 132 DLTKTCEFIVHS 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,437,419
Number of Sequences: 237096
Number of extensions: 1968693
Number of successful extensions: 4768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4768
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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