Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O22
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical pr... 38 0.008
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 30 2.2
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 30 2.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.1
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 28 8.9
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/81 (28%), Positives = 47/81 (58%)
Frame = +3
Query: 546 LRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHYPWVWGI 725
LRK+ V+I+ + + +++F+K N+ LG+ +E LA+ + F +P G+
Sbjct: 127 LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGL 186
Query: 726 LLGSIYASLSCAVVMPSXLKV 788
+ G + A++S AV MP+ +++
Sbjct: 187 ICGFVVATVSPAVGMPTMIRL 207
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 41.1 bits (92), Expect = 9e-04
Identities = 23/81 (28%), Positives = 47/81 (58%)
Frame = +3
Query: 546 LRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHYPWVWGI 725
LRK+ V+I+ + + +++F+K N+ LG+ +E LA+ + F +P G+
Sbjct: 127 LRKLSLVVIIIRWGISINVRFIKKNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGL 186
Query: 726 LLGSIYASLSCAVVMPSXLKV 788
+ G + A++S AV MP+ +++
Sbjct: 187 ICGFVVATVSPAVGMPTMIRL 207
>Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical
protein F57G8.5 protein.
Length = 498
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 528 PHVDNFLRKIYPVIILGKSSLGWDLKFMKANWRQVFSLGVVPWTAEVLALATCSRYFLHY 707
P + +RK+ +I+ + L D+KF+ N ++G+V E++A+ S L
Sbjct: 108 PFTETMIRKVALAMIVIRWGLATDVKFLYENAVTPVTIGLVTAIGEIIAITIASFLILDI 167
Query: 708 PWVWGILLGSIYASLSCAVVMPSXL 782
+V + I +S AV +P+ +
Sbjct: 168 SFVMAVFCALILVIVSPAVTVPAMI 192
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -1
Query: 774 RASPQHKTKMRR*TQGEFPKPRDNGGSTASMSREREPQPSRVPHRG*KLDANWPS*ILSP 595
R SP + + +R + + P R ST+ + R R P P+++P R + D+ P S
Sbjct: 492 RRSPSPERQRKRRSPSDSPPTRRL--STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGSE 549
Query: 594 NPEM 583
+P+M
Sbjct: 550 SPKM 553
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -1
Query: 774 RASPQHKTKMRR*TQGEFPKPRDNGGSTASMSREREPQPSRVPHRG*KLDANWPS*ILSP 595
R SP + + +R + + P R ST+ + R R P P+++P R + D+ P S
Sbjct: 492 RRSPSPERQRKRRSPSDSPPTRRL--STSPIRRRRSPSPNKLPVRRRRHDSGSPDRDGSE 549
Query: 594 NPEM 583
+P+M
Sbjct: 550 SPKM 553
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 334 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 432
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 168 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 200
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 334 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 432
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 189 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 221
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 334 GGYFGLRGETGGVGMENGSNQQSLWLSHGAADN 432
GG+ G +G GG G +NG N Q+ + G N
Sbjct: 174 GGFGGNQGNQGGFGGQNGQNGQNTGNNGGFGGN 206
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 165 LYTPMRN*KREPDLSPSTDTEKNASKDNVKNK 260
+Y P + E D SPS EKN KD+ K++
Sbjct: 766 VYEPAVTDRSEQDKSPSLPREKNIGKDSGKSR 797
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 269 VPYLDSNSCSFFGINYSRSFSLGATLA-CVGRRVELEWKMVQTSSRCGYRMEQRTTPTET 445
V YL+ ++ +FG +Y+ LGA + C+ R +E+ WK ++ R+E +T T
Sbjct: 373 VAYLEQSN-PWFGPHYADLIRLGAVYSPCMRRELEM-WKAIEEDR----RIENKTGCCIT 426
Query: 446 HYAPSTSGCY 475
+ SGCY
Sbjct: 427 N---DRSGCY 433
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,066,488
Number of Sequences: 27780
Number of extensions: 380685
Number of successful extensions: 1108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -