Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O21
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0002 - 6858257-6861205                                           29   3.4  
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    29   4.5  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   4.5  
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403...    29   4.5  
12_02_1241 - 27286095-27286979                                         28   6.0  

>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 DDDTVRSTPSHHRSRPVHV*RTPDDPQPV 254
           D+ +V S P HHR R V   R+P   +PV
Sbjct: 365 DERSVHSPPDHHRERRVERPRSPPRRRPV 393


>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 186 STPSHHRSRPVHV*RTPD--DPQPV*TRLGQTSTPTTTRRSKLVADN*QCKNKMSFEK 353
           +T  H + RPVH   T +  DP+ V T   +   PT  R  +L+  +  C N +S+ K
Sbjct: 534 ATALHTQERPVHTPETTNEIDPKSVITSEKENRPPTKQRLRRLIIRS--CNNILSWLK 589


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 180 VRSTPSHHRSRPVHV*RTPDDPQPV 254
           +RS PSHHR+  +HV +T +D +PV
Sbjct: 82  LRSWPSHHRA--LHVKKTIEDAEPV 104


>02_01_0548 +
           4035265-4035431,4035517-4035651,4035859-4036081,
           4036282-4036468,4036627-4036811,4037435-4037572,
           4037995-4038123
          Length = 387

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 172 MTRSALLLATIGLGLSTFSVRQMILNQSRRV*DKPVLPQQPAGASLS 312
           MT+S L L TI    S    +  +L Q+    D PV P  P G  LS
Sbjct: 334 MTQSGLFLRTIQGAASMTGRKVTVLRQAGAACDHPVDPAYPEGRYLS 380


>12_02_1241 - 27286095-27286979
          Length = 294

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 303 CSGGLLWEYWFVLNASRLVEDHLAYAKRGQAETDGG 196
           CSG   W +  +LNA+ L      Y KRG  + DGG
Sbjct: 247 CSGIGAWVFNTLLNAALLWVFLHCYGKRGVCDDDGG 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,414
Number of Sequences: 37544
Number of extensions: 308516
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)