Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O21
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 31 0.57
Z46240-4|CAA86314.1| 255|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical pr... 28 7.0
M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein ( C.ele... 28 7.0
L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal p... 28 7.0
AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein. 28 7.0
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 31.5 bits (68), Expect = 0.57
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +3
Query: 54 IREDQRVSYI---IWIGHNENDTSCPVRVKTHIFAASEP*EDDDTVRSTPSHHRSRPVHV 224
+R D+R+ + I I H E+D PV++ ++ A++ E D +R S + +
Sbjct: 259 MRSDKRIRLVSCPIIILHAEDDKILPVKLGRALYEAAKDAERDIKIREFSSDYGLGHKFI 318
Query: 225 *RTPDDPQPV*TRLGQTSTPTT 290
R P+ P+ + +G + P+T
Sbjct: 319 CRYPELPEIIEEFVGSVTPPST 340
>Z46240-4|CAA86314.1| 255|Caenorhabditis elegans Hypothetical
protein B0272.4 protein.
Length = 255
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 4 PADDFEQDRREKTIFLSFAKISGCLISFGSDIMKTTQVAQYALRLTYSQQANREKMMT 177
PA FE+D K I ++K+S + ++M+TTQ+ L + +Q + M +
Sbjct: 182 PAATFEKDA--KKIIDRYSKLSPITMKVAKELMRTTQIKDELLTVNRKEQVHLNGMFS 237
>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical protein
F16A11.3b protein.
Length = 1364
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 348 QKTFCFCIVNCLRQACSGGLLWEYWFVLNASRLVEDHLAYAKRGQAE 208
++TFCF LR G+ + Y+F +L +D + + E
Sbjct: 1072 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1118
>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 348 QKTFCFCIVNCLRQACSGGLLWEYWFVLNASRLVEDHLAYAKRGQAE 208
++TFCF LR G+ + Y+F +L +D + + E
Sbjct: 1198 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1244
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical protein
F16A11.3b protein.
Length = 1364
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 348 QKTFCFCIVNCLRQACSGGLLWEYWFVLNASRLVEDHLAYAKRGQAE 208
++TFCF LR G+ + Y+F +L +D + + E
Sbjct: 1072 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1118
>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -3
Query: 348 QKTFCFCIVNCLRQACSGGLLWEYWFVLNASRLVEDHLAYAKRGQAE 208
++TFCF LR G+ + Y+F +L +D + + E
Sbjct: 1198 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1244
>Z83129-6|CAB63324.1| 101|Caenorhabditis elegans Hypothetical
protein W06G6.10 protein.
Length = 101
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 384 CPTWMHSGVFFFQKTFCFCIVNCLRQACSG 295
C + MH + FF + C C C++ C G
Sbjct: 72 CCSCMHGVLRFFAELCCNCCAGCVQGICQG 101
>M22751-1|AAA28106.1| 211|Caenorhabditis elegans protein (
C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
Length = 211
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 220 WTGRDRWWLGVERTVSSSSHGS 155
WTG D +W G T SS S S
Sbjct: 18 WTGDDSYWAGAGTTASSQSASS 39
>L15201-2|AAA27945.2| 200|Caenorhabditis elegans Male abnormal
protein 5 protein.
Length = 200
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 220 WTGRDRWWLGVERTVSSSSHGS 155
WTG D +W G T SS S S
Sbjct: 7 WTGDDSYWAGAGTTASSQSASS 28
>AF277990-1|AAG00458.1| 200|Caenorhabditis elegans MAB-5 protein.
Length = 200
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 220 WTGRDRWWLGVERTVSSSSHGS 155
WTG D +W G T SS S S
Sbjct: 7 WTGDDSYWAGAGTTASSQSASS 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,465
Number of Sequences: 27780
Number of extensions: 289426
Number of successful extensions: 658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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