Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O19
(549 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13... 174 1e-42
UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8; ... 174 1e-42
UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1... 81 1e-14
UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; ... 79 5e-14
UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8; ... 64 3e-09
UniRef50_Q4S7Z6 Cluster: Chromosome 9 SCAF14710, whole genome sh... 38 0.15
UniRef50_Q0J762 Cluster: Os08g0228200 protein; n=4; Oryza sativa... 34 1.9
UniRef50_Q2Y8H2 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_A1K862 Cluster: Putative TonB-dependent receptor protei... 33 3.3
UniRef50_A7NXG8 Cluster: Chromosome chr5 scaffold_2, whole genom... 33 3.3
UniRef50_Q7YXI4 Cluster: General control nonrepressed 5; n=4; Sc... 33 3.3
UniRef50_A2EQF4 Cluster: Putative uncharacterized protein; n=2; ... 33 4.4
UniRef50_Q9G8N7 Cluster: Haem lyase; n=1; Naegleria gruberi|Rep:... 33 5.8
UniRef50_Q4T6P6 Cluster: Chromosome undetermined SCAF8681, whole... 32 7.6
UniRef50_Q185R6 Cluster: Putative membrane protein precursor; n=... 32 7.6
UniRef50_A5NR56 Cluster: Putative uncharacterized protein; n=1; ... 32 7.6
>UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13;
Eukaryota|Rep: U5 snRNP-specific protein variant - Homo
sapiens (Human)
Length = 398
Score = 174 bits (424), Expect = 1e-42
Identities = 74/97 (76%), Positives = 87/97 (89%)
Frame = +1
Query: 10 DTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGN 189
+TD+GNNPKGYLPSHYERVQMLLSDRFLG+FMVP+Q SWNYNFMGVRHDPNMKY +QL N
Sbjct: 304 NTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLAN 363
Query: 190 PREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 300
P+EFYHEVHRP+HF+NFA +++ +ADREDL+A
Sbjct: 364 PKEFYHEVHRPSHFLNFALLQE--GEVYSADREDLYA 398
>UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8;
n=106; Eukaryota|Rep: Pre-mRNA-processing-splicing factor
8 - Homo sapiens (Human)
Length = 2335
Score = 174 bits (424), Expect = 1e-42
Identities = 74/97 (76%), Positives = 87/97 (89%)
Frame = +1
Query: 10 DTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGN 189
+TD+GNNPKGYLPSHYERVQMLLSDRFLG+FMVP+Q SWNYNFMGVRHDPNMKY +QL N
Sbjct: 2241 NTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLAN 2300
Query: 190 PREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 300
P+EFYHEVHRP+HF+NFA +++ +ADREDL+A
Sbjct: 2301 PKEFYHEVHRPSHFLNFALLQE--GEVYSADREDLYA 2335
>UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1;
Plasmodium falciparum 3D7|Rep: Pre-mRNA splicing factor,
putative - Plasmodium falciparum (isolate 3D7)
Length = 3136
Score = 81.4 bits (192), Expect = 1e-14
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +1
Query: 55 YERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFM 234
YE VQ+LLS+ F+GYF++P WNYN MG++ + N KY L P+ FY ++HRP HF+
Sbjct: 3057 YEPVQILLSNVFVGYFLIPDDHIWNYNLMGIKFNNNQKYAPHLDIPQPFYADIHRPNHFL 3116
Query: 235 NFAAMEDAAA 264
F+ ++ A
Sbjct: 3117 QFSLLDQRDA 3126
>UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; n=1;
Ajellomyces capsulatus NAm1|Rep: Pre-mRNA processing
splicing factor 8 - Ajellomyces capsulatus NAm1
Length = 2739
Score = 79.4 bits (187), Expect = 5e-14
Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Frame = +1
Query: 25 NNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMK--YGVQLGNPRE 198
+ P+GY S E+ Q+LLSD+ GYF+VP WNY+FMG K V++ P
Sbjct: 2651 DQPQGYSTSMGEKCQLLLSDKIRGYFLVPENNVWNYSFMGSSFSSLEKRPIYVKIDTPLR 2710
Query: 199 FYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 300
FY + HRP HF NFA +ED I DR D FA
Sbjct: 2711 FYDDQHRPLHFQNFAELED-----IWVDRVDNFA 2739
>UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8;
Trypanosomatidae|Rep: PRP8 protein homologue, putative -
Leishmania infantum
Length = 2427
Score = 63.7 bits (148), Expect = 3e-09
Identities = 31/89 (34%), Positives = 43/89 (48%)
Frame = +1
Query: 31 PKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHE 210
P+ PS + LS +F+VP+ WNY F G N +Y V + P F+H
Sbjct: 2330 PEATDPSFSSPCRGTLSSEARSFFLVPADRVWNYFFKGALWRENTEYDVVVDVPLPFFHA 2389
Query: 211 VHRPAHFMNFAAMEDAAAPTIAADREDLF 297
+HRP HF+NF + D A D D+F
Sbjct: 2390 LHRPDHFLNFTRIGDGAEVVDETDPNDVF 2418
>UniRef50_Q4S7Z6 Cluster: Chromosome 9 SCAF14710, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 9
SCAF14710, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 2154
Score = 37.9 bits (84), Expect = 0.15
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 196 EFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA*I*SRSIFLCVSLYVVIEIKKKINS 375
E+Y P ++FAA E+ +P +A + + I C S++ VI K+
Sbjct: 58 EYYSNTPLPLLILSFAAEENQPSPLVAMLISGVKGLLVKYWILFCCSMFFVISFSGKVVV 117
Query: 376 YLAVYICFRLFNFVLFR 426
Y +YI LF VL++
Sbjct: 118 YKILYIVLFLFCIVLYQ 134
>UniRef50_Q0J762 Cluster: Os08g0228200 protein; n=4; Oryza
sativa|Rep: Os08g0228200 protein - Oryza sativa subsp.
japonica (Rice)
Length = 373
Score = 34.3 bits (75), Expect = 1.9
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 288 FSVGGDCWCCSIFHSSKVHEMRRSVNLVVEL-ARVAELHTVFHIRVV 151
F VGG WC +H+ + +++ +EL + AE+ T+F IR++
Sbjct: 57 FDVGGFDWCLRYYHNGNIESDDDYISVFLELMTKDAEVRTIFDIRML 103
>UniRef50_Q2Y8H2 Cluster: Putative uncharacterized protein; n=1;
Nitrosospira multiformis ATCC 25196|Rep: Putative
uncharacterized protein - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 100
Score = 33.9 bits (74), Expect = 2.5
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = -1
Query: 216 VNLVVELARVAELHTVFHIRVVTDAHKVIIPTALRRHHEIAQKSI*EQHLHSLVM 52
+ ++V LA +A +T H+R+ TD K++ P A + + + + Q LH+L++
Sbjct: 37 LTILVVLATLAFQYTFVHLRINTDTAKLVAPDAPFQQYSRSYEEAFSQDLHTLLL 91
>UniRef50_A1K862 Cluster: Putative TonB-dependent receptor protein;
n=1; Azoarcus sp. BH72|Rep: Putative TonB-dependent
receptor protein - Azoarcus sp. (strain BH72)
Length = 738
Score = 33.5 bits (73), Expect = 3.3
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +1
Query: 4 PADTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPS-QGSWNYNF---MGVRHDPNMKY 171
P DTDRG + +GY+ + + F M Q W+ F +G+R D + Y
Sbjct: 384 PYDTDRGKSEQGYVYPNTTIPMQIYDAAFENVSMYAQLQSEWDEAFSTMVGLRMDRHSDY 443
Query: 172 GVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPT 270
G Q NPR P H + F E AP+
Sbjct: 444 G-QTVNPRLGAVWRLNPQHVLKFLYGEAFRAPS 475
>UniRef50_A7NXG8 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=7; Magnoliophyta|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 869
Score = 33.5 bits (73), Expect = 3.3
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +1
Query: 25 NNPKGYLPSHYERVQMLLSDRFLGYF------MVPSQGSWNYNFMGVRHDPNMKYGVQLG 186
NNPK +PS E L RFLG++ ++ +G Y F G R +K +++
Sbjct: 429 NNPKHMVPSLLETGARLFVTRFLGHYISTGCLILLEEGGTIYTFEGSRKKCLLKVSLKIH 488
Query: 187 NPREFY 204
NP +FY
Sbjct: 489 NP-QFY 493
>UniRef50_Q7YXI4 Cluster: General control nonrepressed 5; n=4;
Schistosoma|Rep: General control nonrepressed 5 -
Schistosoma mansoni (Blood fluke)
Length = 899
Score = 33.5 bits (73), Expect = 3.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 103 MVPSQGSWNYNFMGVRHDPNMK-YGVQLGNPREFYHEVHRPAHFMNFA 243
M PSQG F V + +K YG Q+ N + YH H+ HF+ +A
Sbjct: 542 MFPSQGFTEIVFCAVIFNEQVKGYGTQMMNHLKDYHLQHKIFHFLTYA 589
>UniRef50_A2EQF4 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1444
Score = 33.1 bits (72), Expect = 4.4
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 358 KKKINSYLAVYICFRLFNFVLFRFIWVCNRIRIICVL 468
KKK +YLAVY F LFR I V + I+IIC++
Sbjct: 440 KKKYKTYLAVYFVFFGLGIFLFRTIGV-HWIKIICII 475
>UniRef50_Q9G8N7 Cluster: Haem lyase; n=1; Naegleria gruberi|Rep:
Haem lyase - Naegleria gruberi
Length = 474
Score = 32.7 bits (71), Expect = 5.8
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 316 SIFLCVSLYVVIEIKKKINSYLAVYICFRLFNFVLFRFIW-VCNRIRIICVLACINNKFR 492
+I++ + + + I I YL++ +C + + +++ VC+ I +IC+ INN +
Sbjct: 277 TIYIYIYVNINIIFMYYILVYLSILLCILFYYVIRLDYVYLVCSSIYLICIFFYINNIYI 336
Query: 493 Y 495
Y
Sbjct: 337 Y 337
>UniRef50_Q4T6P6 Cluster: Chromosome undetermined SCAF8681, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF8681, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1867
Score = 32.3 bits (70), Expect = 7.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 294 QVFSVGGDCWCCSIFHSSKVHE 229
QVF V G CW C + HSS V++
Sbjct: 1281 QVFKVEGKCWACLLAHSSCVYD 1302
>UniRef50_Q185R6 Cluster: Putative membrane protein precursor; n=2;
Clostridium difficile|Rep: Putative membrane protein
precursor - Clostridium difficile (strain 630)
Length = 374
Score = 32.3 bits (70), Expect = 7.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 319 IFLCVSLYVVIEIKKKINSYL--AVYICFRLFNFVLFRFI--WVCNRIRIICVLACINN 483
+FLC +L + KKK+N YL ++ + + V F F+ W N RI INN
Sbjct: 71 LFLCCTLSTIFNKKKKLNIYLKNSILNILSIVSIVYFLFVVLWGINYNRIPLETTLINN 129
>UniRef50_A5NR56 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 242
Score = 32.3 bits (70), Expect = 7.6
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 144 RPSRPEYEIRC-ATRQPSRVLPRG 212
RPSRP+Y C +T P+R LPRG
Sbjct: 209 RPSRPDYRKLCGSTSMPTRTLPRG 232
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,253,146
Number of Sequences: 1657284
Number of extensions: 9069818
Number of successful extensions: 21590
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21544
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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