Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O19
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    80   2e-16
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   5.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   7.3  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   7.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.7  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 37/88 (42%), Positives = 50/88 (56%)
 Frame = +1

Query: 37   GYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLGNPREFYHEVH 216
            GY PS  E+ Q+LLSDR  G+F+VP +G WNYNF G    P M Y ++L  P  F+   H
Sbjct: 2278 GYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEH 2337

Query: 217  RPAHFMNFAAMEDAAAPTIAADREDLFA 300
            RP H +++  +E      +  D  D FA
Sbjct: 2338 RPTHVISYTELE--TNDRLEEDMPDAFA 2363


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   RPADTDRGNNPKGYLPSHYERVQMLLSDRFL 93
           + ++ D GN  + Y+P  YER+   + ++ +
Sbjct: 186 KKSEEDNGNGEQNYIPEQYERLDSPVKEKII 216


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 WCRRRAVGIITLWASVTTR 160
           WC + AV +  LWA++ TR
Sbjct: 416 WCPQNAVFVPGLWANLATR 434


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 299 HKFNLEAFFYAFHFML**K*KRK*TAI*LFIYAFDYLILSSFVLY 433
           H F +EAFFY F F        +   I +FI+ +D  ++  F  +
Sbjct: 67  HTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFF 111


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 243 SKVHEMRRSVNLVVELARVAELHTVFHIR-VVTDAHKVII 127
           S +HE      +V EL  V  ++TVF  + + + AHK ++
Sbjct: 204 SAIHEQLEGKEVVNELVAVYLIYTVFKDQGISSKAHKALV 243


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 202 YHEVHRPAHFMNFAAMEDAAAPTIAADREDL 294
           +HE H  +HF N A   +A++    A  + L
Sbjct: 7   FHEHHAKSHFHNNACQSNASSSACRASEDHL 37


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 136 FMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAP 267
           F+ +   P+ +   + G   EF HE+H  A F+   A ++   P
Sbjct: 42  FLSLHPAPSAESVEKEGAELEFEHELHLLAGFLGLIAAKEEETP 85


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   GRPILIEEIILKATCRVITRECRCCSQIDFWAISWCRRRAVGI 130
           GRP L+   +++   R  ++     + + FWA+SW   R VG+
Sbjct: 372 GRPDLV---VIQTKIRKESKIPSNATFLYFWALSWNTPRVVGV 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,288
Number of Sequences: 5004
Number of extensions: 38645
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)