Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O19
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 138 3e-33
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 138 3e-33
08_01_0808 + 7828453-7829607 34 0.065
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 30 1.4
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 30 1.4
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 30 1.4
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 30 1.4
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 30 1.4
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 29 1.8
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 28 5.6
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 27 9.9
08_01_0040 - 287030-287569,287981-288196,288269-288535 27 9.9
08_01_0038 - 282431-283954 27 9.9
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 138 bits (334), Expect = 3e-33
Identities = 57/97 (58%), Positives = 74/97 (76%)
Frame = +1
Query: 7 ADTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLG 186
++ D G+NP GYLP+HYE+VQMLLSDRFLG++MVP WN+NFMGV+HDP MKY ++LG
Sbjct: 2255 SNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMGVKHDPLMKYNMKLG 2314
Query: 187 NPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLF 297
PR+FYHE HRP HF+ F+ +++ DRED F
Sbjct: 2315 TPRDFYHEDHRPTHFLEFSNIDE--GEVAEGDREDTF 2349
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 138 bits (334), Expect = 3e-33
Identities = 57/97 (58%), Positives = 74/97 (76%)
Frame = +1
Query: 7 ADTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLG 186
++ D G+NP GYLP+HYE+VQMLLSDRFLG++MVP WN+NFMGV+HDP MKY ++LG
Sbjct: 2255 SNKDSGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNTPWNFNFMGVKHDPLMKYNMKLG 2314
Query: 187 NPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLF 297
PR+FYHE HRP HF+ F+ +++ DRED F
Sbjct: 2315 TPRDFYHEDHRPTHFLEFSNIDE--GEVAEGDREDTF 2349
>08_01_0808 + 7828453-7829607
Length = 384
Score = 34.3 bits (75), Expect = 0.065
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 288 FSVGGDCWCCSIFHSSKVHEMRRSVNLVVEL-ARVAELHTVFHIRVV 151
F VGG WC +H+ + +++ +EL + AE+ T+F IR++
Sbjct: 57 FDVGGFDWCLRYYHNGNIESDDDYISVFLELMTKDAEVRTIFDIRML 103
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 540 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 574
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 678 NTNYLGWRHFINQDFGMYALAGEEFWEASHQLAHF 712
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 127 NYNFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHF 231
N N++G RH N +G+ EF+ H+ AHF
Sbjct: 653 NTNYLGWRHFINQDFGMYAVAGDEFWEASHQLAHF 687
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 242 LLWKMLQHQQSPPTEKTCSHK 304
LLW+ +QHQ+ +EK+ H+
Sbjct: 336 LLWRSMQHQRRETSEKSTGHR 356
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 292 SLLCRRRLLVLQHLP*QQSS*NAPVCEP 209
SL RRRLLVLQ P SS PV +P
Sbjct: 19 SLSFRRRLLVLQGPPSSSSSSRHPVGDP 46
>08_01_0040 - 287030-287569,287981-288196,288269-288535
Length = 340
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 46 PSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVR 150
PS++E + + +RFL M G+ N+NF+ R
Sbjct: 245 PSYWENAEEFMPERFLSNTMADYNGN-NFNFLPFR 278
>08_01_0038 - 282431-283954
Length = 507
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 46 PSHYERVQMLLSDRFLGYFMVPSQGSWNYNFM----GVRHDPNMKYGV 177
PS++E + + +RFL M G+ N+NF+ G R P M + +
Sbjct: 410 PSYWENAEEFMPERFLSNTMAGYNGN-NFNFLPFGTGRRICPGMNFAI 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,386,897
Number of Sequences: 37544
Number of extensions: 248307
Number of successful extensions: 593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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