Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O19
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    28   0.072
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 31   PKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYG 174
            P  Y+PS  +   +L+     G  + P +G W++    ++  P+++YG
Sbjct: 956  PNFYMPSEPKAPMILVGP---GTGIAPFRGFWHHRLAEIKRRPDLEYG 1000


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 145 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 255
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 145 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 255
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 504 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 543


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 145 VRHDPNMKYGVQLG-NPR--EFYHEVHRPAHFMNFAAMED 255
           V  D N+K  V++   P+  EF HEV    ++MNF  M++
Sbjct: 130 VNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDE 169


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 190 GCRVAHRISYSGRDG 146
           GC + H ISY   DG
Sbjct: 273 GCNLGHMISYDDTDG 287


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 391 ICFRLFNFVLFRFIWV 438
           + F +FN + + FIW+
Sbjct: 454 VAFIIFNILYWSFIWI 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,785
Number of Sequences: 438
Number of extensions: 2849
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)