Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O18
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.90 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.4  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 378 TVNNVRSNGSGEEEIRWKRRAGARRSHLTSLYARRFATG 494
           TV+ V SN  G + IR+K+  G  +    +LYA + A G
Sbjct: 273 TVSQV-SNWFGNKRIRYKKNIGKAQEE-ANLYAAKKAAG 309


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 548 FASIKMLLKIKHKKSNILQSKRLLCER 628
           F +I  L +  H K +I + KRL C +
Sbjct: 209 FVAITKLEQWNHSKVHIREDKRLTCPK 235


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin
          deacetylase 1 protein.
          Length = 534

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 15 VAARQRVLYLLDAMACTIFSR 77
          +A +Q  L++L   ACT+F++
Sbjct: 1  MALKQGALFILAICACTVFAQ 21


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 388 LFTVYGTTRYIDVFLSHKLNIMRNGSET 305
           L  ++G TRY D+F+  ++ +  N  E+
Sbjct: 84  LEALFGKTRYPDIFMREEVALKINLPES 111


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 507 ENPTRTQQGTRDSPSPASK 563
           E PT +     +SP+PAS+
Sbjct: 218 EFPTTSSSSALESPNPASR 236


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 697 HRLXVDHAADKKHIKSLCSNIDTVE 771
           H L    + + + +K+ CS++D+V+
Sbjct: 260 HHLVNPQSLNHQEVKAECSDLDSVD 284


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 507 ENPTRTQQGTRDSPSPASK 563
           E PT +     +SP+PAS+
Sbjct: 7   EFPTTSSSSALESPNPASR 25


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 507 ENPTRTQQGTRDSPSPASK 563
           E PT +     +SP+PAS+
Sbjct: 7   EFPTTSSSSALESPNPASR 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,319
Number of Sequences: 336
Number of extensions: 3608
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)