Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O16
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.18
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.43
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 4.0
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 27 4.0
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 26 5.2
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 26 6.9
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 6.9
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 25 9.2
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 9.2
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -3
Query: 518 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 345
ALV+ P RELA H + +H E + + + R+ + G+ +RLL HV P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.43
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = -1
Query: 577 APSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 398
+PS+ T+TSPS+ S +S + S++ + S S+S+S S + S
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
Query: 397 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 284
+ SS+ + + ++H S+ S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -3
Query: 545 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 366
+P +E ++A + Q ++ + QR ++ Q++ +G+ HPA R PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 114 VSNVWACLAVLYYGSKSPNNLLTGV 40
V + W C +Y+ SP L TG+
Sbjct: 158 VESAWRCAEAIYFPPSSPYTLSTGI 182
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 417 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 539
ETF++ V+C+P AL V + H HRL + +H +++
Sbjct: 72 ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 539 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 408
VHR+++ + L+ QP+ L + LE +L + LEG+ G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 113 TQGKRIKMAVPPIYNPVIPCVHPIPGGMYPGRMLRIQGQSAARRTEV 253
TQGK I V Y+P P + I PG+++ + G+S ++ +
Sbjct: 580 TQGKVIFSHVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTI 626
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -1
Query: 559 NCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSGIPPAVS 380
+ +STS ST S +S TP S+++ + S S S+S S A S ++S
Sbjct: 138 SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSS--GSIS 195
Query: 379 SA 374
SA
Sbjct: 196 SA 197
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 218 CGACALGTCRPGWGARTVSPGC 153
CG+CA C+P G + GC
Sbjct: 56 CGSCASVLCQPTGGKARLMEGC 77
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 559 NCTSTSPSTVRCEMRWYCSRCGNSQK-CT 476
+C V+C+ ++ CSRC S++ CT
Sbjct: 17 SCLRCRRRKVKCDRQYPCSRCKESEESCT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,931
Number of Sequences: 5004
Number of extensions: 48859
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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