Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_O16
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    23   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.3  

>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 82  KHCKARPNV*NSRKK---NKNGSTADIQPGDTVRAPHPGR 192
           K  K+RP++    K+   +KNG T D   G  +R   P R
Sbjct: 48  KEGKSRPSLDIDYKQRVYDKNGMTGDAYGGLNIRPGQPSR 87


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 581 LRALEPDELHEHVPVHREVRDALVLQPVRELAEVHA 474
           L A +PD L          ++ALVL+ V+  AE HA
Sbjct: 325 LGADDPDSLRRKRQKINNSQNALVLRHVQAEAEKHA 360


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 448 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 347
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWF 118


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 181 HPGRHVPRAHAPHPGXECRPAHRGSRST 264
           HP +H P  + PH G    P H+    T
Sbjct: 317 HPHQHHPSQYHPHRGSS--PHHQHGNHT 342


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 HPIPGGMYPGRMLR 217
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 448 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 347
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWF 118


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 176 HPIPGGMYPGRMLR 217
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 670 TVRSKGSTEESGRGALDTRSED 735
           TVR K   E +    LDTR+ED
Sbjct: 67  TVRFKNELERNITIKLDTRAED 88



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 222 RXRVPPGAQRFAINLQCGPNTD 287
           + RVPPG   +  N +C  + D
Sbjct: 462 KIRVPPGTPIYECNKRCNCDID 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,667
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)