Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_O13
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 192 6e-50
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 49 8e-07
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 35 0.014
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 28 1.2
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 28 1.6
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 27 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.8
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 27 3.8
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 5.0
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 6.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.7
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 192 bits (467), Expect = 6e-50
Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 3/175 (1%)
Frame = +3
Query: 228 WEKQQKKTFTAWCNSHLRKAGT-GIENIEDDFRNGLKLMLLLEVISGETLPKPDRG-KMR 401
W+ Q +TFT W N+ L + ++ D +G+ L+ LLE+I E L + +R +MR
Sbjct: 6 WQSVQNRTFTKWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMR 65
Query: 402 FHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEEMTA 581
H++ NVNKAL++I SKG+ L +IG +IVDGNLK+ LG+IWT+ILRF I DI+ E +TA
Sbjct: 66 VHRLENVNKALEYIKSKGMPLTNIGPADIVDGNLKLILGLIWTLILRFTIADINEEGLTA 125
Query: 582 KEGLLLWCQRKTAPY-KNVNVXNFHLSFKDGLAFCALIHRHRPXLIDYSKLSKDN 743
KEGLLLWCQRKTA Y V+V +F S+ +GLAFCALIH+HRP L+DY+KL K N
Sbjct: 126 KEGLLLWCQRKTANYHPEVDVQDFTRSWTNGLAFCALIHQHRPDLLDYNKLDKKN 180
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 48.8 bits (111), Expect = 8e-07
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 14/178 (7%)
Frame = +3
Query: 234 KQQKKTFTAWCNSHLRKAGTGIENIEDDFRNGLKLMLLLEVISGETL--------PKPDR 389
+++ + FT W NS I + ++ R+GL L+ + I+ T+ P
Sbjct: 385 EREARVFTLWLNS--LDVTPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGD 442
Query: 390 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTII---LRFAIQDI 560
MRF + N N A+D ++G LV I +I DG+ +TL ++W ++ + + +
Sbjct: 443 EMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSL 502
Query: 561 SVEEMTAKEG-LLLWCQRKTAP-YKNVNVXNFH-LSFKDGLAFCALIHRHRPXLIDYS 725
S T + ++ W A K + +F S G+ ++H + +DY+
Sbjct: 503 SRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYN 560
Score = 35.5 bits (78), Expect = 0.008
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +3
Query: 312 DDFRNGLKLMLLLEVISGETLPKPDRGKMRFHK-------IANVNKALDFI-ASKGVKLV 467
D ++GL L L+ +T+ + K R +K I N N ++ A G+ +
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISIT 206
Query: 468 SIGAEEIVDGNLKMTLGMIWTIILRFAIQDISV 566
+IGA +I++G + LG++W II R + I +
Sbjct: 207 NIGAGDILEGREHLILGLVWQIIRRGLLGKIDI 239
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 34.7 bits (76), Expect = 0.014
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +3
Query: 309 EDDFRNGLKLMLLLEVISGETLPKPD-RGKMRFHKIANVNKALDFIASKGV-KLVSIGAE 482
E RNG+ L LL++ + L K +++F N+NK LDFI G+ ++
Sbjct: 66 EQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELT 125
Query: 483 EIVDG-NLKMTLGMIWTIILRFAIQDISVEEMTAKEGL 593
+I +G NL + I + ++QD++ + + E L
Sbjct: 126 DIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENL 163
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 254 HSMVQQSPQKSW-----HRHREHRGRLPQWPEAHVAAGGHLRRDSAQARPW 391
H +++ P+ +W H+HRE RG ++ GH +S Q W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATW 189
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +2
Query: 254 HSMVQQSPQKSW-----HRHREHRGRLPQWPEAHVAAGGHLRRDSAQARPW 391
H +++ P+ +W H+HRE RG ++ GH +S Q W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNSPQHATW 189
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 588 GLLLWCQRKTAPYKNVNVXNFHLSFKDGLAFCALIHRHRPXLIDYSKLSKDN 743
GL L+ Q + A + F + D FCAL H + D S L +DN
Sbjct: 13 GLTLFSQFQRAFGLTITRRGFKVQESDEEPFCALHHPNTGEYFDLSGLIRDN 64
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -3
Query: 231 PRPGLGDPHAPTPPLVPCNRPGTTRHSCLSP-RCPSSWSPH*PSIRCSFEPMTANSRVLI 55
P+P +G P P P P P T + L P P++ +P P+ S P + R +
Sbjct: 1201 PKPSVGVPPVPPPSTAP---PVPTPSAGLPPVPVPTAKAPPVPA-PSSEAPSVSTPRSSV 1256
Query: 54 RTAHCNRQPA 25
+ H N P+
Sbjct: 1257 PSPHSNASPS 1266
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 234 SPRPGLGDP---HAPTPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSR 64
SP+P + D HAP PP+ P N H+ ++ R PS+ P R SF +++ S
Sbjct: 1364 SPKPQIPDSSNVHAPPPPVQPMN--AMPSHNAVNAR-PSA-----PERRDSFGSVSSGSN 1415
Query: 63 V 61
V
Sbjct: 1416 V 1416
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 332 EAHVAAGGHLRRDSAQARPW 391
EAHVAA +LR+ RPW
Sbjct: 250 EAHVAALDYLRQHFVSCRPW 269
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +3
Query: 408 KIANVNKALDFIASKGVKLVSIGAEEIVDGNLKM----TLGMIWTIILRFAI---QDISV 566
K N N+AL I S G+ G EI L+ +L +I I F +D+S+
Sbjct: 242 KHCNTNRALKIIHSLGMFACIFGPLEIHTKKLQSKNIESLSLIPYAIDLFGYLQKKDVSI 301
Query: 567 EEMTAKEGLLLWCQRKTAPYKNVNV 641
+ +++ + W T P+ N ++
Sbjct: 302 KNLSSSSKYIFWLAIATLPWYNWSI 326
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 224 GLGETTEKDIHSMVQQSPQKSWHRHREHRGR 316
G+ T + +HSM +Q W ++ + GR
Sbjct: 377 GITYTGSRTLHSMAEQGHAPKWFKYVDREGR 407
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.6
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Frame = -3
Query: 243 SVVSPRPGLGDPH--APTPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEP--MT 76
S+ S RP P AP PP +P GT SP P + P+I + +P
Sbjct: 235 SIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294
Query: 75 ANSRVLIRTAHCN--RQPAARPLSRR 4
+SRV N R P P SRR
Sbjct: 295 PSSRVSAAALAANKKRPPPPPPPSRR 320
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 89 NEHRIDGQCGDHDDGQRGDKQL 154
+E I+ DHDDG+ D +L
Sbjct: 204 SESEIESSDSDHDDGENSDSKL 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,701
Number of Sequences: 5004
Number of extensions: 58064
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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